Closed wubaosheng closed 2 years ago
sm.samap.adata AnnData object with n_obs × n_vars = 3124 × 69475 obs: 'pl_tissue', 'pl_subcluster', 'pl_cluster', 'pl_leiden_clusters', 'pl_tissue_smedwi', 'sc_leiden_clusters', 'sc_tissue', 'sc_cluster_t', 'hy_leiden_clusters', 'hy_Cluster', 'batch', 'species', 'cluster;tissue;Cluster_mapping_scores' uns: 'neighbors', 'gnnm_corr', 'umap', 'homology_gene_names_dict' obsm: 'wPCA', 'X_umap' layers: 'X_disp' obsp: 'connectivities', 'xsim', 'knn' varp: 'homology_graph_reweighted', 'homology_graph'
sm.sams['sc'].adata AnnData object with n_obs × n_vars = 1071 × 10162 obs: 'leiden_clusters', 'tissue', 'cluster_t', 'cluster_uncertainty' var: 'mask_genes', 'means', 'variances', 'weights', 'spatial_dispersions' uns: 'path_to_file', 'preprocess_args', 'ranked_genes', 'run_args', 'rank_genes_groups' obsm: 'X_pca', 'X_umap', 'X_umap_samap' varm: 'PCs', 'PCs_SAMap', 'tissue_scores', 'tissue_pvals' layers: 'X_disp' obsp: 'connectivities', 'distances', 'nnm'
I can not find the "tissue" in the sm.samap.adata
sm.samap.adata AnnData object with n_obs × n_vars = 3124 × 69475 obs: 'pl_tissue', 'pl_subcluster', 'pl_cluster', 'pl_leiden_clusters', 'pl_tissue_smedwi', 'sc_leiden_clusters', 'sc_tissue', 'sc_cluster_t', 'hy_leiden_clusters', 'hy_Cluster', 'batch', 'species', 'cluster;tissue;Cluster_mapping_scores' uns: 'neighbors', 'gnnm_corr', 'umap', 'homology_gene_names_dict' obsm: 'wPCA', 'X_umap' layers: 'X_disp' obsp: 'connectivities', 'xsim', 'knn' varp: 'homology_graph_reweighted', 'homology_graph'
I can not find the "tissue" in the sm.samap.adata