A tool set for short variant discovery in genetic sequence data.
Visit http://genome.sph.umich.edu/wiki/vt for instructions.
vt uses htslib1, tclap2, Rmath3, pcre24 and libsvm5.
How to cite
vt normalize :
Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204
Reference