Open axiezai opened 4 years ago
Add rpe-pair and rpe-all conditions
rpe-all added 266850d511f6168f4ef83a70bea418380579546d
Add fslreorient2std
for datasets saved in non-fsl compatible coordinate systems
add gradient check and re-export gradients after reorienting DWI: https://community.mrtrix.org/t/reorienting-dwi-data-and-bvecs/5266
implement rpe_pair
.
$ mrcat b0_ap.mif b0_pa.mif b0_pair.mif -axis 3; dwifslpreproc DWI_in.mif DWI_out.mif -rpe_pair -se_epi b0_pair.mif -pe_dir ap -readout_time 0.72 -align_seepi
See rob's comment here: https://community.mrtrix.org/t/dwipreproc-register-fieldmap-to-dwi-other-questions/621/4
All commands should have adequate inputs now, but some are missing full functionality