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bahlolab
/
moimix
R package for inferring multiple infections from high-throughput sequencing data
http://bahlolab.github.io/moimix/
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Error in Fws
#35
tebbenk
opened
4 months ago
0
What R version can install correctly this package, I have try R3.2.5, R3.6.0 but can not install correctly
#34
fangyangw
opened
1 year ago
0
problem with alleleCounts
#33
jdaron
opened
4 years ago
1
fix docs, R CMD CHECK no warnings/errors
#32
sa-lee
closed
4 years ago
0
Error in getFws()
#31
Kasumi2018
opened
5 years ago
2
Hyperlink DOI against preferred resolver
#30
katrinleinweber
closed
6 years ago
0
allow coverage filtering when estimating MAF
#29
sa-lee
opened
8 years ago
0
add more flexibility by allowing user to supply their own read counts matrix.
#28
sa-lee
opened
8 years ago
0
store simulation results as suite of moimix objects
#27
sa-lee
opened
8 years ago
0
package fails with latest release of SeqArray
#26
sa-lee
closed
8 years ago
0
adding CI
#25
sa-lee
closed
8 years ago
0
bug fixes, version update
#24
sa-lee
closed
8 years ago
0
update extractPED to offer MOI incorporation
#23
sa-lee
closed
8 years ago
0
Error in getTheta
#22
sa-lee
closed
8 years ago
0
error in plot.bafMatrix after filtering
#21
sa-lee
closed
8 years ago
0
replace `foreach` with BioC friendly package
#20
sa-lee
opened
8 years ago
0
code tidy up, prepare for BioC
#19
sa-lee
opened
8 years ago
0
model inference with MSE
#18
sa-lee
opened
8 years ago
0
update and test simulation methods using alleleCounts object
#17
sa-lee
opened
8 years ago
0
Bug: plot BAF matrix x-axis labelling
#16
sa-lee
closed
8 years ago
0
Bug: need to create method for loading gds file in package
#15
sa-lee
closed
8 years ago
0
create plot methods for BAF matrix class
#14
sa-lee
closed
8 years ago
0
rewrite EM algorithm in C++
#13
sa-lee
opened
8 years ago
0
Naming inconsistencies
#12
sa-lee
opened
8 years ago
0
Barcode update to include latest Volkmann data
#11
sa-lee
closed
8 years ago
2
Barcode function recode heterogenomic calls
#10
sa-lee
closed
8 years ago
0
Extract barcode function
#9
sa-lee
closed
8 years ago
0
Implement method in Li et al., 2007
#8
sa-lee
opened
8 years ago
0
BAF variance estimation
#7
sa-lee
closed
8 years ago
0
Baf around key loci
#6
sa-lee
closed
8 years ago
1
New simulation study to include IBD?
#5
sa-lee
closed
8 years ago
1
Start preparing vignette
#4
sa-lee
closed
8 years ago
0
Create sliding window class to fit model in genomic regions
#3
sa-lee
opened
8 years ago
3
unit tests
#2
sa-lee
opened
8 years ago
0
follow-up on haplotype based methods
#1
sa-lee
closed
8 years ago
1