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baliga-lab
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cmonkey2
Python port of cMonkey, a machine-learning based method for clustering
GNU Lesser General Public License v3.0
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Update scoring.py
#31
dreiss-isb
closed
10 years ago
0
Update makerestsv.py
#30
dreiss-isb
closed
10 years ago
0
running with --nomotifs should skip MEME step altogether (for speed)
#29
dreiss-isb
closed
10 years ago
2
meme still required if --nomotifs is turned on
#28
dreiss-isb
closed
10 years ago
1
viewer defaults and requests
#27
dreiss-isb
closed
10 years ago
10
Update default.ini
#26
dreiss-isb
closed
10 years ago
0
Update cmonkey.py
#25
dreiss-isb
closed
10 years ago
0
output directory still not working right
#24
dreiss-isb
closed
10 years ago
0
Create install_meme.sh
#23
dreiss-isb
closed
10 years ago
0
added output directory command line
#22
dreiss-isb
closed
10 years ago
0
updated debugging funcs
#21
dreiss-isb
closed
10 years ago
0
Updates for debugging
#20
dreiss-isb
closed
10 years ago
1
File writing fails when output directory is nonexistent
#19
aebrahim
closed
11 years ago
4
Current version of BeautifulSoup
#18
ghost
closed
11 years ago
4
Weeder and Set-Enrichment Working
#17
cplaisier
closed
11 years ago
0
Weeder Works
#16
cplaisier
closed
11 years ago
1
MEME versions: selection/detection/dependency update
#15
justinashworth
closed
11 years ago
1
JSON and R
#14
fschmitz
closed
11 years ago
1
yo!
#13
fschmitz
closed
11 years ago
2
None value returns from meme / mast
#12
fschmitz
closed
12 years ago
2
logging
#11
fschmitz
closed
12 years ago
11
Lieber Wei-Ju
#10
fschmitz
closed
12 years ago
3
logging module usage (and IPython)
#9
justinashworth
closed
12 years ago
2
meme suite 4.8.1, more useful logging, non-standard microbial runs
#8
justinashworth
closed
12 years ago
1
filtering/selection of biclusters in clusterviewer?
#7
scalefreegan
closed
7 years ago
1
Weeder, MotifScoringFunctionBase
#6
justinashworth
closed
12 years ago
1
run restart from checkpoint
#5
justinashworth
closed
12 years ago
1
Cluster Viewer displays original gene expressions
#4
weiju
closed
12 years ago
1
cmonkey config file?
#3
scalefreegan
closed
11 years ago
3
cluster_viewer: upstream and downstream motifs?
#2
justinashworth
closed
12 years ago
7
tps (T. pseudonana) integration, +messages, utils
#1
justinashworth
closed
12 years ago
1
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