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baymlab
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wastewater_analysis
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
MIT License
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[QUESTION] Can primer sequences be trimmed directly from raw fastq data?
#14
molly-hetheringtonrauth
opened
1 month ago
0
Add "-l 100" flag to the paftools.js call command in the call_variants.sh script to allow for smaller genome sizes
#13
molly-hetheringtonrauth
opened
8 months ago
0
Kallisto runs too slowly
#12
fanyucai1
opened
11 months ago
0
Wrong classification sublineages?
#11
LauraVP1994
opened
1 year ago
4
VLQ for Nanopore sequencing data
#10
leocaserta
closed
11 months ago
1
Problem in installing jvarkit
#9
waqasuddinkhan
closed
2 years ago
1
0 sequences from selection found
#8
chirrie
opened
2 years ago
20
ModuleNotFoundError: No module named 'vcf on select sample script
#7
chirrie
closed
2 years ago
0
paftools.js: command not found
#6
chirrie
closed
2 years ago
1
sequence id different for selected sequences in fasta and metadata
#5
irinak128
closed
2 years ago
7
few bugs and tune ups
#4
dfeistel3
closed
11 months ago
3
wrong key ('N-content') used in the script select_samples.py; should be 'N-Content'
#3
irinak128
closed
2 years ago
1
Building a reference set troubleshooting
#2
dfeistel3
closed
2 years ago
2
Metadata
#1
dfeistel3
closed
2 years ago
2