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bcgsc
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arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
GNU General Public License v3.0
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Add prefix option
#172
lcoombe
opened
4 days ago
0
arcs-make option to specify prefix
#171
pdimens
opened
2 weeks ago
10
Fix ubuntu CI
#170
lcoombe
closed
1 month ago
0
downloading conda in macOS CI tests
#169
emilyyzhangg
closed
1 month ago
0
Prepare for release v1.2.7
#168
lcoombe
closed
7 months ago
0
Update version message
#167
lcoombe
closed
7 months ago
0
Prepare for release v1.2.6
#166
lcoombe
closed
11 months ago
0
Fix arcs-tigmint rule in arcs-make
#165
lcoombe
closed
11 months ago
0
tigmint-make 'missing separator' error
#164
juliadouglasf
closed
10 months ago
8
Understanding specific scaffolding output
#163
RNieuwenhuis
closed
10 months ago
4
`arcs-long`/`arks-long` vs `LINKS`?
#162
taprs
closed
1 year ago
2
Incorrect program call?
#161
jsharbrough
closed
1 year ago
6
Update documentation in README.md and arcs-make
#160
lcoombe
closed
1 year ago
0
`arcs-tigmint` and `arks-tigmint` struggle with input files outside working directory
#159
taprs
closed
1 year ago
3
Can this software use HiC data, or need to use the sequencing technology mentioned in your paper?
#158
Jwindler
closed
1 year ago
1
Prepare for release v1.2.5
#157
lcoombe
closed
1 year ago
0
Allow arcs-make to accept uncompressed long read files
#156
lcoombe
closed
1 year ago
0
Parameters for PacBio HiFi data
#155
romseg
closed
2 years ago
3
ARKS fails to create any links with a highly repetitive input
#154
skagawa2
closed
2 years ago
4
Prepare for release v1.2.4
#153
lcoombe
closed
2 years ago
0
Add btllib as a dependancy
#152
lcoombe
closed
2 years ago
0
fastq formatting barcodes in BX tag
#151
annaorteu
closed
2 years ago
8
Update btllib to 1.2.0
#150
jwcodee
closed
2 years ago
0
Prepare for release v1.2.3
#149
lcoombe
closed
2 years ago
0
Reorganize files in Examples folder, require a < 1 for LINKS
#148
lcoombe
closed
2 years ago
0
unrecognized option '--fastq'
#147
aakashsur
closed
2 years ago
3
Add optional dependency of pigz
#146
aakashsur
closed
2 years ago
1
arcs-make in bin
#145
aakashsur
closed
2 years ago
2
Parameters for corrected ONT reads
#144
BaxW
closed
2 years ago
2
Running ARCS and ARKS
#143
aakashsur
closed
2 years ago
2
Add pseudo-linked read simulation diagram
#142
theottlo
closed
2 years ago
1
Scaffolding Expectations
#141
aakashsur
closed
2 years ago
12
arcs-long: tiny PE-pairs are produced
#121
mmokrejs
closed
2 years ago
3
Add -I option to minimap2 commands to avoid splitting index
#120
lcoombe
closed
2 years ago
0
Short read length question: can the tool accept 250?
#119
grendon
closed
2 years ago
2
arcs-1.2.2: abyss-fixmate-ssq sometimes segfaults
#118
mmokrejs
closed
2 years ago
9
Fixes for ARCS-long target
#117
lcoombe
closed
2 years ago
1
Fix CI
#116
lcoombe
closed
2 years ago
0
GCC version update
#115
MurathanGoktas
closed
3 years ago
1
About Running ARCS in default mode
#114
ClarenceHsiang
closed
3 years ago
3
v1.2.2 release
#113
lcoombe
closed
3 years ago
0
Update stalebot to github actions
#112
lcoombe
closed
3 years ago
0
Updating arcs-long with streaming reads
#111
lcoombe
closed
3 years ago
0
Regarding the error info "File contains unpaired reads"
#110
Veldem
closed
3 years ago
7
long-to-linked-pe.cpp: trigger g check if auto_span
#109
jwcodee
closed
3 years ago
0
Feature request: include a gfa file in output
#108
ckeeling
closed
3 years ago
6
Long to linked pe cpp
#107
jwcodee
closed
3 years ago
0
scaffold headers are too long
#106
grendon
closed
3 years ago
2
ARCS release 1.2.1
#105
theottlo
closed
3 years ago
0
ARCS release 1.2.1
#104
theottlo
closed
3 years ago
0
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