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bcgsc
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goldrush
Linear-time de novo Long Read Assembler
GNU General Public License v3.0
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Pin minimap2 version in linux CI
#147
lcoombe
closed
5 days ago
0
Prepare for release v1.2.1
#146
lcoombe
closed
5 days ago
0
Add G to ntLink_rounds command to avoid parameter name collision
#145
lcoombe
closed
6 days ago
0
Properly Calculate Phred average in GoldRush
#144
jwcodee
opened
2 weeks ago
0
prep for release 1.2.0
#143
jwcodee
closed
1 month ago
0
minor bug fixes before goldrush release
#142
emilyyzhangg
closed
1 month ago
0
Gp target integration
#141
emilyyzhangg
closed
1 month ago
0
GoldPolish-Target Integration
#140
emilyyzhangg
closed
1 month ago
0
Update goldpolish
#139
lcoombe
closed
1 month ago
0
Unable to run simulated human HiFi reads
#138
Oieswarya
opened
1 month ago
20
Prepare for release v1.1.2
#137
jwcodee
closed
4 months ago
0
goldrush-path: ensure reads only have atcg
#136
jwcodee
closed
4 months ago
0
Error while running HiFi reads whose mean length is 10k bp
#135
Oieswarya
closed
4 months ago
7
goldrush-path: add tiles and queries logs
#134
jwcodee
closed
6 months ago
0
Prepare for release v1.1.1
#133
jwcodee
closed
7 months ago
0
gr-path: add log for number of valid reads visited when making a silver path
#132
jwcodee
closed
7 months ago
4
Log info and seed design improvement
#131
jwcodee
closed
7 months ago
0
Add note about read order to goldrush makefile and README.md
#130
lcoombe
closed
9 months ago
0
add verbose and debug flag to goldrush path
#129
jwcodee
closed
9 months ago
0
bc unknown command
#128
thdurand4
closed
1 year ago
4
Run GR in subdir and softlink output of each stage to top dir
#127
jwcodee
closed
1 year ago
0
Prepare for release v1.1.0
#126
jwcodee
closed
1 year ago
0
Rename instances of GoldRush-Edit to GoldPolish
#125
jwcodee
closed
1 year ago
1
Question about warning and output
#124
mylena-s
closed
1 year ago
3
Error when running goldrush_test_demo
#123
haraldgrove
closed
1 year ago
3
Update README.md
#122
warrenlr
closed
1 year ago
0
Update README.md
#121
warrenlr
closed
1 year ago
0
Debian Installation issues - memory free issue on test dataset
#120
gringer
closed
1 year ago
9
Update goldrush-edit submodule
#119
lcoombe
closed
1 year ago
0
goldrush for generating UMI consensus?
#118
sagnikbanerjee15
closed
1 year ago
6
ONT read lengths mostly under 10 kb
#117
000generic
closed
1 year ago
2
Goldrush for PacBio or ONT + PacBio
#116
000generic
closed
1 year ago
3
large number of 1bp or small contigs
#115
osilander
closed
1 year ago
4
Update GoldPolish/GoldRush-Edit submodule
#114
lcoombe
closed
1 year ago
0
Using existing Draft Assembly in place of Gold Path Input
#113
Sgakeson
closed
1 year ago
3
Update README, logo
#112
lcoombe
closed
1 year ago
0
Prepare for release v1.0.3
#111
lcoombe
closed
1 year ago
0
Log Message Fix
#110
jwcodee
closed
1 year ago
2
optimize parameters for large genome
#109
rwhetten
closed
1 year ago
6
Combine silver path and golden path generation in one step
#108
jwcodee
opened
1 year ago
0
Set ulimit to max using a bash script
#107
jwcodee
closed
1 year ago
0
Use btllib as a dependency
#106
jwcodee
closed
1 year ago
0
Update goldrush-edit submodule
#105
lcoombe
closed
1 year ago
0
zsh & pipefail
#104
bennuru
closed
1 year ago
7
Fix typo for bin/goldrush help page
#103
lcoombe
closed
1 year ago
0
Update btllib dependency versions
#102
lcoombe
closed
1 year ago
0
core dump in goldrush-edit
#101
abs-yy
closed
1 year ago
7
Set ulimit before running each step of GoldRush
#100
jwcodee
closed
1 year ago
1
Add `ulimit -u` command in driver makefile
#99
lcoombe
closed
1 year ago
1
Update README.md
#98
lcoombe
closed
1 year ago
0
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