calculate ref alt counts for small indel events

bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants

http://mavis.bcgsc.ca

GNU General Public License v3.0

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calculate ref alt counts for small indel events #165

Closed calchoo closed 5 years ago

calchoo commented 5 years ago

calculate the amount of reads that support the reference allele and the somatic event for small indels that are passed into MAVIS. This will only work for precise breakpoints, with the insert size that is smaller than the readlength.

calchoo commented 5 years ago

Feature added to v2.2.0