Closed alexjfortuna closed 5 years ago
@alexjfortuna , that looks like something must be wrong with the aliases column in the annotations file. I'll check it out
@alexjfortuna sorry about that, I've replaced the annotations file at the original link with a new one I just generated. Could you try again with the new file? (download from the same link. should be 147M not instead of 146M). You won't need to update mavis itself, just the annotations file.
Hi @creisle we are testing now with new file, will report back! thank you for speedy assistance with this.
HI @creisle everything annotating correctly. Thank you.
MAVIS version: 2.2.5
Python version: 3.6.4
OS: Centos/SGE
Expected Behaviour
Samples annotating correctly and annotations in final summary file named correctly mavis_Qz8stepNwGy4kJuh6cMnnb-v2-a1-chr10_chr10-C10orf68_CCDC7.legend.json
Actual Behaviour
files are named like so:
filenames: mavis_Qz8stepNwGy4kJuh6cMnnb-v2-a1-chr10_chr10-C-1-0-o-r-f-6-8_C-C-D-C-7.legend.json
gene1_aliases | gene2_aliases 7;C;C;C;D | 0;1;6;8;C;f;o;r 7;C;C;C;D | 0;1;6;8;C;f;o;r 4;I;N;S;T | M;N;T 1;9;C;D;K;T | 7;B;P;R;R
Steps to Reproduce the Behaviour
Ran MAVIS as specified in documentation
Have you seen this behavior?