Closed moldach closed 4 years ago
Hi @moldach ! thanks for reporting this, we'll have someone look into is ASAP and get back to you
Hi @moldach ,
Can you see if you have blat
installed in the $PATH
when you're running the submit? It's a dependency that is needed for the mini tutorial.
You'll have to remake the output_dir
which blat
rm -r output_dir/
mavis setup tests/data/pipeline_config.cfg -o output_dir
mavis schedule -o output_dir/ --submit
This solved the problem, thanks
MAVIS version: 2.2.6
Python version: 3.8.0
OS: CentOS Linux release 7.5.1804 (Core)
I am using a shared academic HPC (SLURM scheduler) and do not have
root
permissions. Therefore, I have tried to install MAVIS and run locally.I follow along with the steps to the Mini Tutorial but after using the
--submit
FLAG the jobs show as NOT SUBMITTED and there are missing log file: warnings/errors under the validate section.Install locally
Here is where I see the errors:
When I try to run with the
`--resubmit
FLAG:I would appreciate your help solving this issue.