Feature/rtd fixes

[creisle]

BugFixes

• fixes a bunch of read-the-docs errors that happen when generating the docs

Improvements

• Lints some of the markdown files

[codecov[bot]]

Codecov Report

Merging #233 (76aed5a) into develop (a083b7c) will increase coverage by 10.67%. The diff coverage is n/a.

@@             Coverage Diff              @@
##           develop     #233       +/-   ##
============================================
+ Coverage    80.52%   91.20%   +10.67%     
============================================
  Files           52       52               
  Lines         9126     9126               
============================================
+ Hits          7349     8323      +974     
+ Misses        1777      803      -974     

Flag	Coverage Δ
unittests	91.20% <ø> (+10.67%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
mavis/annotate/fusion.py	96.02% <0.00%> (+0.33%)	:arrow_up:
mavis/bam/cigar.py	98.14% <0.00%> (+0.61%)	:arrow_up:
mavis/schedule/job.py	78.26% <0.00%> (+0.72%)	:arrow_up:
mavis/cluster/main.py	90.24% <0.00%> (+0.81%)	:arrow_up:
mavis/annotate/genomic.py	93.12% <0.00%> (+1.03%)	:arrow_up:
mavis/breakpoint.py	94.61% <0.00%> (+1.15%)	:arrow_up:
mavis/illustrate/elements.py	96.37% <0.00%> (+1.69%)	:arrow_up:
mavis/blat.py	90.27% <0.00%> (+1.85%)	:arrow_up:
mavis/align.py	92.65% <0.00%> (+2.23%)	:arrow_up:
mavis/annotate/file_io.py	88.73% <0.00%> (+2.25%)	:arrow_up:
... and 15 more

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