Feature/docs and types

[creisle]

Mostly these updates are for improved readability of the code base and single-source of truth for settings

• Use class style syntax for constants (enforces type-linting)
• Update docs to match snakemake updates
• Use config object rather than WeakMavisNamespace constants (no more env variables)
• Remove "magic" .data attributes access. Add property getters for any .data attributes used on BreakpointPair

[codecov[bot]]

Codecov Report

Merging #242 (be3772e) into develop_v3 (d99112a) will increase coverage by 11.37%. The diff coverage is 95.78%.

@@               Coverage Diff               @@
##           develop_v3     #242       +/-   ##
===============================================
+ Coverage       75.26%   86.64%   +11.37%     
===============================================
  Files              53       53               
  Lines            8726     8911      +185     
  Branches         2277     2242       -35     
===============================================
+ Hits             6568     7721     +1153     
+ Misses           1686      726      -960     
+ Partials          472      464        -8     

Flag	Coverage Δ
unittests	86.64% <95.78%> (+11.37%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
mavis/validate/constants.py	100.00% <ø> (ø)
mavis/summary/summary.py	54.22% <46.15%> (+29.93%)	:arrow_up:
mavis/illustrate/scatter.py	73.07% <66.66%> (-0.26%)	:arrow_down:
mavis/illustrate/constants.py	97.87% <80.00%> (-0.36%)	:arrow_down:
mavis/pairing/main.py	83.56% <90.00%> (+69.67%)	:arrow_up:
mavis/validate/base.py	81.32% <91.04%> (+15.26%)	:arrow_up:
mavis/validate/evidence.py	94.05% <92.85%> (+4.71%)	:arrow_up:
mavis/schemas/__init__.py	94.11% <94.11%> (ø)
mavis/validate/call.py	86.20% <95.83%> (+14.30%)	:arrow_up:
mavis/constants.py	93.92% <97.67%> (+19.03%)	:arrow_up:
... and 54 more

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