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bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
72 stars 13 forks source link

Feature/use docker #243

Closed creisle closed 3 years ago

creisle commented 3 years ago

Add a docker container for MAVIS

codecov[bot] commented 3 years ago

Codecov Report

Merging #243 (b8e15d0) into develop_v3 (be3772e) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop_v3     #243   +/-   ##
===========================================
  Coverage       86.64%   86.64%           
===========================================
  Files              53       53           
  Lines            8911     8911           
  Branches         2242     2242           
===========================================
  Hits             7721     7721           
  Misses            726      726           
  Partials          464      464
Flag Coverage Δ
unittests 86.64% <ø> (ø)

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Impacted Files Coverage Δ
src/mavis/__init__.py 100.00% <ø> (ø)
src/mavis/align.py 85.39% <ø> (ø)
src/mavis/annotate/base.py 83.68% <ø> (ø)
src/mavis/annotate/constants.py 100.00% <ø> (ø)
src/mavis/annotate/file_io.py 81.19% <ø> (ø)
src/mavis/annotate/fusion.py 91.05% <ø> (ø)
src/mavis/annotate/genomic.py 87.97% <ø> (ø)
src/mavis/annotate/main.py 90.47% <ø> (ø)
src/mavis/annotate/protein.py 82.05% <ø> (ø)
src/mavis/annotate/splicing.py 90.96% <ø> (ø)
... and 43 more

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