TypeError: __init__() missing 1 required positional argument: 'args' - Githubissues

bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants

http://mavis.bcgsc.ca

GNU General Public License v3.0

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TypeError: init() missing 1 required positional argument: 'args' #258

Open imsarath opened 2 years ago

imsarath commented 2 years ago

Describe the bug

Encountered the following error msg when try to run mavis with the local scheduler.

File - "mavis/schedule/pipeline.py", line 887, in read_build_file
TypeError: __init__() missing 1 required positional argument: 'args'

To Reproduce Try to run with a local scheduler

Expected behavior Successful execution of mavis with local cores.

Versions (please complete the following information):

OS: Ubuntu 18.04.5 LTS
Python Version 3.6.13
MAVIS Version 2.2.10
Blat/BWA Version - 36/bwa-0.7.17

mattdoug604 commented 2 years ago

Hi @imsarath, thanks for reporting this.

Version 2.2.10 of MAVIS is still under review. I would recommend using version 2.2.9 for now (https://github.com/bcgsc/mavis/releases/tag/v2.2.9)