bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Feature/python3.9 10 #267

Closed creisle closed 2 years ago

creisle commented 2 years ago

Improvements

creisle commented 2 years ago

I am debugging why the docker build is failing, something to do with the new toml/setup.cfg it looks like not liking data files

codecov[bot] commented 2 years ago

Codecov Report

Merging #267 (ca06372) into develop_v3 (9b3c72c) will decrease coverage by 0.02%. The diff coverage is 76.92%.

Impacted file tree graph

@@              Coverage Diff               @@
##           develop_v3     #267      +/-   ##
==============================================
- Coverage       86.70%   86.67%   -0.03%     
==============================================
  Files              53       53              
  Lines            8897     8909      +12     
  Branches         2310     2310              
==============================================
+ Hits             7714     7722       +8     
- Misses            722      726       +4     
  Partials          461      461              
Flag Coverage Δ
unittests 86.67% <76.92%> (-0.03%) :arrow_down:

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Impacted Files Coverage Δ
src/mavis/tools/vcf.py 94.32% <50.00%> (-1.33%) :arrow_down:
src/mavis/schemas/__init__.py 85.00% <60.00%> (-9.12%) :arrow_down:
src/mavis/assemble.py 90.32% <88.23%> (+0.21%) :arrow_up:

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