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bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Release/2.2.11 #268

Closed calchoo closed 2 years ago

calchoo commented 2 years ago

BugFixes

Fixes install bug related to pysam: Requires setuptools <58 (see: https://setuptools.pypa.io/en/latest/history.html#v58-0-0)

Improvements

Swap from non-std/custom license to GPLv3 Remove unused dependency (pyvcf)

codecov[bot] commented 2 years ago

Codecov Report

Merging #268 (3b8eebe) into master (0f2b8b9) will decrease coverage by 0.05%. The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #268      +/-   ##
==========================================
- Coverage   91.02%   90.96%   -0.06%     
==========================================
  Files          57       57              
  Lines       10328    10328              
==========================================
- Hits         9401     9395       -6     
- Misses        927      933       +6
Flag Coverage Δ
unittests 90.96% <ø> (-0.06%) :arrow_down:

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Impacted Files Coverage Δ
mavis/schedule/local.py 68.36% <0.00%> (-5.11%) :arrow_down:
mavis/bam/cache.py 87.66% <0.00%> (-0.65%) :arrow_down:

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