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bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Edited docker container needed for long reads support and added to documentation #270

Closed zhemingfan closed 2 years ago

zhemingfan commented 2 years ago

Integration of dependencies (minimap2 + wtdbg2) for long read support into develop_v3

Improvements

codecov[bot] commented 2 years ago

Codecov Report

Merging #270 (14d4a91) into develop_v3 (94b7630) will increase coverage by 0.02%. The diff coverage is n/a.

Impacted file tree graph

@@              Coverage Diff               @@
##           develop_v3     #270      +/-   ##
==============================================
+ Coverage       86.67%   86.69%   +0.02%     
==============================================
  Files              53       53              
  Lines            8908     8908              
  Branches         2310     2310              
==============================================
+ Hits             7721     7723       +2     
+ Misses            726      725       -1     
+ Partials          461      460       -1
Flag Coverage Δ
unittests 86.69% <ø> (+0.02%) :arrow_up:

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Impacted Files Coverage Δ
src/mavis/breakpoint.py 91.26% <0.00%> (+0.64%) :arrow_up:

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