Bugfix/support validation skip

[creisle]

BugFixes

• Fixes input in snakemake file for annotation when validation is run (previously was passing a directory instead of a file)

Improvements

• Add tests for workflow that skips the validation step
• Add tutorial examples for workflow that skips the validation step

[codecov[bot]]

Codecov Report

Merging #296 (3d86023) into develop_v3 (94b7630) will increase coverage by 0.47%. The diff coverage is 100.00%.

@@              Coverage Diff               @@
##           develop_v3     #296      +/-   ##
==============================================
+ Coverage       86.67%   87.14%   +0.47%     
==============================================
  Files              53       53              
  Lines            8908     8909       +1     
  Branches         2310     2311       +1     
==============================================
+ Hits             7721     7764      +43     
+ Misses            726      698      -28     
+ Partials          461      447      -14     

Flag	Coverage Δ
unittests	87.14% <100.00%> (+0.47%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/mavis/main.py	89.39% <100.00%> (+0.08%)	:arrow_up:
src/mavis/util.py	80.25% <100.00%> (ø)
src/mavis/breakpoint.py	91.26% <0.00%> (+0.64%)	:arrow_up:
src/mavis/annotate/fusion.py	91.72% <0.00%> (+0.66%)	:arrow_up:
src/mavis/summary/summary.py	54.92% <0.00%> (+0.70%)	:arrow_up:
src/mavis/pairing/main.py	84.93% <0.00%> (+1.36%)	:arrow_up:
src/mavis/summary/main.py	77.46% <0.00%> (+1.40%)	:arrow_up:
src/mavis/illustrate/diagram.py	86.63% <0.00%> (+2.02%)	:arrow_up:
src/mavis/annotate/variant.py	89.35% <0.00%> (+2.43%)	:arrow_up:
src/mavis/pairing/pairing.py	89.72% <0.00%> (+12.32%)	:arrow_up:

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