Feature/annotations cleanup

[creisle]

Same as PR #297 without the pyfaidx changes

Breaking Changes

• Drops support for tab delimited annotations input file (already deprecated in v2), now only supports JSON format

Improvements

• Remove some unused imports
• use JSON schema to validate annotations input JSON file
• Use mavis_config in mavis instead of separate schemas files (should have been deleted when we made the mavis_config package originally)

[codecov[bot]]

Codecov Report

Merging #298 (02c108f) into develop_v3 (3d86023) will increase coverage by 0.00%. The diff coverage is 100.00%.

@@             Coverage Diff             @@
##           develop_v3     #298   +/-   ##
===========================================
  Coverage       87.14%   87.14%           
===========================================
  Files              53       52    -1     
  Lines            8909     8839   -70     
  Branches         2311     2295   -16     
===========================================
- Hits             7764     7703   -61     
+ Misses            698      691    -7     
+ Partials          447      445    -2     

Flag	Coverage Δ
unittests	87.14% <100.00%> (+<0.01%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/mavis/validate/evidence.py	94.00% <ø> (-0.06%)	:arrow_down:
src/mavis/validate/main.py	90.64% <ø> (-0.06%)	:arrow_down:
src/mavis/annotate/file_io.py	76.83% <100.00%> (-2.19%)	:arrow_down:
src/mavis/annotate/main.py	90.47% <100.00%> (ø)
src/mavis/illustrate/constants.py	97.87% <100.00%> (ø)
src/mavis/pairing/constants.py	100.00% <100.00%> (ø)
src/mavis/validate/base.py	81.15% <100.00%> (ø)

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