Feature/reorganize tests

[creisle]

Bug Fxies

• Support loading gzipped vcf files (were supported in v2)

Improvements

• reorganize tests to better match the src directory structure
• rename mavis/tools to mavis/convert to be less confusing with the actual tools directory and to match the name of the step it is used for like other parts of the code

Note: almost all of the changes here are just files being renamed and imports being updated to match

[codecov[bot]]

Codecov Report

Merging #308 (192c267) into develop_v3 (42fa682) will increase coverage by 0.01%. The diff coverage is 100.00%.

@@              Coverage Diff               @@
##           develop_v3     #308      +/-   ##
==============================================
+ Coverage       86.34%   86.35%   +0.01%     
==============================================
  Files              54       54              
  Lines            9256     9266      +10     
  Branches         2394     2395       +1     
==============================================
+ Hits             7992     8002      +10     
  Misses            781      781              
  Partials          483      483              

Flag	Coverage Δ
unittests	86.35% <100.00%> (+0.01%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/mavis/cluster/main.py	79.83% <ø> (ø)
src/mavis/convert/breakdancer.py	89.47% <ø> (ø)
src/mavis/convert/chimerascan.py	95.65% <ø> (ø)
src/mavis/convert/cnvnator.py	100.00% <ø> (ø)
src/mavis/convert/constants.py	100.00% <ø> (ø)
src/mavis/convert/starfusion.py	100.00% <ø> (ø)
src/mavis/convert/transabyss.py	81.57% <ø> (ø)
src/mavis/convert/__init__.py	87.21% <100.00%> (ø)
src/mavis/convert/vcf.py	94.77% <100.00%> (ø)
src/mavis/main.py	89.39% <100.00%> (ø)

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