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bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
72 stars 13 forks source link

#325 Adding arriba support #326

Closed calchoo closed 2 years ago

calchoo commented 2 years ago

Adding support for arriba output file

codecov[bot] commented 2 years ago

Codecov Report

Merging #326 (dc67258) into develop_v2 (6689de6) will increase coverage by 9.54%. The diff coverage is 96.15%.

@@              Coverage Diff               @@
##           develop_v2     #326      +/-   ##
==============================================
+ Coverage       81.48%   91.03%   +9.54%     
==============================================
  Files              57       58       +1     
  Lines           10322    10348      +26     
==============================================
+ Hits             8411     9420    +1009     
+ Misses           1911      928     -983
Flag Coverage Δ
unittests 91.03% <96.15%> (+9.54%) :arrow_up:

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Impacted Files Coverage Δ
mavis/tools/constants.py 100.00% <ø> (ø)
mavis/tools/arriba.py 95.65% <95.65%> (ø)
mavis/tools/__init__.py 90.90% <100.00%> (+0.21%) :arrow_up:
mavis/annotate/fusion.py 96.02% <0.00%> (+0.33%) :arrow_up:
mavis/util.py 88.25% <0.00%> (+0.33%) :arrow_up:
mavis/constants.py 94.04% <0.00%> (+0.42%) :arrow_up:
mavis/config.py 88.69% <0.00%> (+0.50%) :arrow_up:
mavis/bam/cigar.py 98.14% <0.00%> (+0.61%) :arrow_up:
mavis/schedule/job.py 78.26% <0.00%> (+0.72%) :arrow_up:
mavis/cluster/main.py 90.24% <0.00%> (+0.81%) :arrow_up:
... and 22 more

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creisle commented 2 years ago

Would be good to add this to the list of supported tools in the documentation as well