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bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Feature/add arriba support #329

Closed calchoo closed 2 years ago

calchoo commented 2 years ago

Adding support for arriba output file for v3

codecov[bot] commented 2 years ago

Codecov Report

Merging #329 (6e3cf9d) into develop_v3 (9027aa9) will increase coverage by 0.03%. The diff coverage is 92.59%.

@@              Coverage Diff               @@
##           develop_v3     #329      +/-   ##
==============================================
+ Coverage       86.45%   86.49%   +0.03%     
==============================================
  Files              56       57       +1     
  Lines            9315     9342      +27     
  Branches         2404     2407       +3     
==============================================
+ Hits             8053     8080      +27     
  Misses            779      779              
  Partials          483      483
Flag Coverage Δ
unittests 86.49% <92.59%> (+0.03%) :arrow_up:

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Impacted Files Coverage Δ
src/mavis/convert/arriba.py 91.30% <91.30%> (ø)
src/mavis/convert/__init__.py 87.76% <100.00%> (+0.26%) :arrow_up:
src/mavis/convert/constants.py 100.00% <100.00%> (ø)
src/mavis/breakpoint.py 91.26% <0.00%> (+0.64%) :arrow_up:

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