Open zhemingfan opened 1 year ago
Certain parts of the validate module contains redundant code: For example - count: https://github.com/bcgsc/mavis/blob/develop_v3/src/mavis/validate/align.py#L417
Align_options for BWA-MEM, which doesn't use any additional align parameter. https://github.com/bcgsc/mavis/blob/develop_v3/src/mavis/validate/align.py#L464
These should be removed or better documented.
Hi @zhemingfan,
Just to clarify, did you encounter an error here or is this something you noticed could be be improved upon?
For now, it's just enhancements.
Certain parts of the validate module contains redundant code: For example - count: https://github.com/bcgsc/mavis/blob/develop_v3/src/mavis/validate/align.py#L417
Align_options for BWA-MEM, which doesn't use any additional align parameter. https://github.com/bcgsc/mavis/blob/develop_v3/src/mavis/validate/align.py#L464
These should be removed or better documented.