bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Release/v3.1.0 #339

Closed creisle closed 1 year ago

creisle commented 1 year ago

BugFixes

New Features

Improvements

codecov[bot] commented 1 year ago

Codecov Report

Base: 86.44% // Head: 86.69% // Increases project coverage by +0.24% :tada:

Coverage data is based on head (60817e7) compared to base (479fdeb). Patch coverage: 84.64% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #339 +/- ## ========================================== + Coverage 86.44% 86.69% +0.24% ========================================== Files 54 57 +3 Lines 9281 9342 +61 Branches 2397 2342 -55 ========================================== + Hits 8023 8099 +76 + Misses 778 762 -16 - Partials 480 481 +1 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `86.69% <84.64%> (+0.24%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/bcgsc/mavis/pull/339?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | Coverage Δ | | |---|---|---| | [src/mavis/validate/evidence.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3ZhbGlkYXRlL2V2aWRlbmNlLnB5) | `93.96% <ø> (ø)` | | | [src/mavis/util.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3V0aWwucHk=) | `78.09% <33.33%> (ø)` | | | [src/mavis/breakpoint.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2JyZWFrcG9pbnQucHk=) | `91.23% <69.44%> (-0.03%)` | :arrow_down: | | [src/mavis/summary/summary.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3N1bW1hcnkvc3VtbWFyeS5weQ==) | `64.58% <80.00%> (+9.65%)` | :arrow_up: | | [src/mavis/validate/base.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3ZhbGlkYXRlL2Jhc2UucHk=) | `78.84% <83.33%> (-2.25%)` | :arrow_down: | | [src/mavis/validate/gather.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3ZhbGlkYXRlL2dhdGhlci5weQ==) | `83.88% <83.88%> (ø)` | | | [src/mavis/convert/\_\_init\_\_.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvX19pbml0X18ucHk=) | `87.76% <87.50%> (+0.55%)` | :arrow_up: | | [src/mavis/convert/arriba.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvYXJyaWJhLnB5) | `91.30% <91.30%> (ø)` | | | [src/mavis/validate/call.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3ZhbGlkYXRlL2NhbGwucHk=) | `87.93% <91.66%> (+0.76%)` | :arrow_up: | | [src/mavis/convert/vcf.py](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvdmNmLnB5) | `94.11% <92.30%> (-0.66%)` | :arrow_down: | | ... and [12 more](https://codecov.io/gh/bcgsc/mavis/pull/339/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc)

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