bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
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Ignore type-checking only lines in coverage report #340

Closed creisle closed 1 year ago

codecov[bot] commented 1 year ago

Codecov Report

Base: 86.67% // Head: 86.81% // Increases project coverage by +0.13% :tada:

Coverage data is based on head (ec82b70) compared to base (f8bbfa2). Patch has no changes to coverable lines.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop_v3 #340 +/- ## ============================================== + Coverage 86.67% 86.81% +0.13% ============================================== Files 57 57 Lines 9342 9327 -15 Branches 2342 2335 -7 ============================================== Hits 8097 8097 + Misses 763 755 -8 + Partials 482 475 -7 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `86.81% <ø> (+0.13%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/bcgsc/mavis/pull/340?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | Coverage Δ | | |---|---|---| | [src/mavis/validate/align.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3ZhbGlkYXRlL2FsaWduLnB5) | `85.30% <0.00%> (+0.54%)` | :arrow_up: | | [src/mavis/util.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3V0aWwucHk=) | `78.64% <0.00%> (+0.55%)` | :arrow_up: | | [src/mavis/annotate/fusion.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2Fubm90YXRlL2Z1c2lvbi5weQ==) | `91.83% <0.00%> (+0.59%)` | :arrow_up: | | [src/mavis/illustrate/elements.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2lsbHVzdHJhdGUvZWxlbWVudHMucHk=) | `92.80% <0.00%> (+0.66%)` | :arrow_up: | | [src/mavis/annotate/protein.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2Fubm90YXRlL3Byb3RlaW4ucHk=) | `78.17% <0.00%> (+0.78%)` | :arrow_up: | | [src/mavis/bam/stats.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2JhbS9zdGF0cy5weQ==) | `86.84% <0.00%> (+1.12%)` | :arrow_up: | | [src/mavis/types.py](https://codecov.io/gh/bcgsc/mavis/pull/340/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3R5cGVzLnB5) | `100.00% <0.00%> (+28.57%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc)

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