bcgsc / mavis

Merging, Annotation, Validation, and Illustration of Structural variants
http://mavis.bcgsc.ca
GNU General Public License v3.0
72 stars 14 forks source link

Refactor/enforce isort #342

Closed creisle closed 1 year ago

creisle commented 1 year ago

Improvements

codecov[bot] commented 1 year ago

Codecov Report

Base: 86.92% // Head: 86.92% // No change to project coverage :thumbsup:

Coverage data is based on head (7825b3c) compared to base (bfdf8b7). Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop_v3 #342 +/- ## =========================================== Coverage 86.92% 86.92% =========================================== Files 57 57 Lines 9390 9390 Branches 2355 2355 =========================================== Hits 8162 8162 Misses 752 752 Partials 476 476 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `86.92% <100.00%> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/bcgsc/mavis/pull/342?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | Coverage Δ | | |---|---|---| | [src/mavis/convert/transabyss.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvdHJhbnNhYnlzcy5weQ==) | `81.57% <ø> (ø)` | | | [src/tools/convert\_annotations\_format.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL3Rvb2xzL2NvbnZlcnRfYW5ub3RhdGlvbnNfZm9ybWF0LnB5) | `78.90% <ø> (ø)` | | | [src/mavis/annotate/file\_io.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2Fubm90YXRlL2ZpbGVfaW8ucHk=) | `77.06% <100.00%> (ø)` | | | [src/mavis/cluster/\_\_init\_\_.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NsdXN0ZXIvX19pbml0X18ucHk=) | `100.00% <100.00%> (ø)` | | | [src/mavis/constants.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnN0YW50cy5weQ==) | `96.72% <100.00%> (ø)` | | | [src/mavis/convert/arriba.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvYXJyaWJhLnB5) | `90.90% <100.00%> (-0.40%)` | :arrow_down: | | [src/mavis/convert/vcf.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2NvbnZlcnQvdmNmLnB5) | `94.11% <100.00%> (ø)` | | | [src/mavis/illustrate/diagram.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2lsbHVzdHJhdGUvZGlhZ3JhbS5weQ==) | `86.85% <100.00%> (ø)` | | | [src/mavis/illustrate/util.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL2lsbHVzdHJhdGUvdXRpbC5weQ==) | `84.65% <100.00%> (ø)` | | | [src/mavis/summary/summary.py](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#diff-c3JjL21hdmlzL3N1bW1hcnkvc3VtbWFyeS5weQ==) | `70.00% <100.00%> (ø)` | | | ... and [2 more](https://codecov.io/gh/bcgsc/mavis/pull/342/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc)

:umbrella: View full report at Codecov.
:loudspeaker: Do you have feedback about the report comment? Let us know in this issue.