ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)

Dear Authors,

Question 1: I am using mavis to annotate SV calls from delly and Manta. I ran mavis using the command below and ran into an error due to "Additional properties are not allowed ('summary.cluster_radius' was unexpected)" ?

snakemake -j 1 --configfile config.json --use-singularity -s Snakefile

My config.json

{
    "libraries": {
        "1T": {
            "assign": ["delly","manta"],
            "bam_file": "/shared_2/minhui/fyp/WES/bam/1T_WES.realn.bam",
            "disease_status": "diseased",
            "protocol": "genome"
        }
    },
    "convert": {
        "delly": {
            "assume_no_untemplated": true,
            "file_type": "delly",
            "inputs": ["/shared_2/minhui/fyp/WES/MAVIS/OUTPUT/delly1.vcf"]
        },

        "manta": {
            "assume_no_untemplated": true,
            "file_type": "manta",
            "inputs": ["/shared_2/minhui/fyp/WES/MAVIS/OUTPUT/manta1.vcf"]
        },

    },
    "annotate.draw_fusions_only": false,
    "skip_stage.validate": true,
    "output_dir": "output_dir",
    "reference.aligner_reference":["/shared_2/minhui/ref/GRCh38.d1.vd1.fa"],
    "reference.annotations":    ["/shared_2/minhui/fyp/WES/MAVIS/REF/ensembl79_hg38_annotations.v3.json"],
    "reference.template_metadata": ["/shared_2/minhui/fyp/WES/MAVIS/REF/cytoBand.txt"],
    "reference.reference_genome":   ["/shared_2/minhui/fyp/WES/MAVIS/REF/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna"],
    "reference.masking": ["/shared_2/minhui/fyp/WES/MAVIS/REF/GRCh38_masking.tab"],
    "reference.dgv_annotation": ["/shared_2/minhui/fyp/WES/MAVIS/REF/dgv_hg38_variants.tab"] 
}

Snippet of what I think is the relevant error message (full log included as attachment):

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/lib/python3.7/site-packages/mavis_config/__init__.py", line 71, in validate_config
    os.path.join(os.path.dirname(__file__), f'{schema}.json'),
  File "/usr/local/lib/python3.7/site-packages/snakemake/utils.py", line 150, in validate
    raise WorkflowError("Error validating config file.", e)
snakemake.exceptions.WorkflowError: Error validating config file.
ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)

It seems that mavis run via snakemake/ singularity is using mavis3.0.0, is there any possibility that there is some sort of incompatibility since the latest version is mavis3.1.0?

This was my command for installing mavis_config

python3.7 -m pip install -U setuptools pip wheel
python3.7 -m pip install mavis_config

Question 2: What is the difference between the package from 'pip install mavis_config' VS this one https://pypi.org/project/mavis-config/ ? One is underscore and another one is a dash

Many thanks in advance, Min

log.txt 2022-12-14T170626.781435.snakemake.log

bcgsc / mavis

ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected) #345