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bcgsc
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ntJoin
đŸ”—Genome assembly scaffolder using minimizer graphs
GNU General Public License v3.0
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Install conda using miniforge for macOS
#121
lcoombe
closed
3 weeks ago
0
Update README.md, azure-pipelines.yml
#120
lcoombe
closed
1 month ago
0
Advice. Use only chromosomes as reference or the entire assembly?
#119
V-JJ
closed
3 weeks ago
2
Add packaging dependency
#118
lcoombe
closed
1 month ago
0
Error: No module named 'packaging'
#117
desmodus1984
closed
5 days ago
3
Suggestions on how to set up weights
#116
desmodus1984
closed
1 week ago
6
Overlap detection and edge weight
#115
tbusschau
closed
3 weeks ago
6
Prepare for release v1.1.5
#114
lcoombe
closed
2 months ago
0
Fix for circular references
#113
lcoombe
closed
2 months ago
0
File assemble / check_params does not exist
#112
Kaiden-exe
closed
3 months ago
5
Invalid IUPAC characters
#111
Kaiden-exe
closed
3 months ago
3
Update README.md
#110
lcoombe
closed
4 months ago
0
Assertion error leading to deletion of scaffolds output file
#109
psal591
closed
4 months ago
13
Installation failed / dependencies
#108
steinbrl
closed
4 months ago
6
High percentage of ambiguous bases.
#107
keith-harrison
closed
5 months ago
3
Merged chromosomes by telomere sequence?
#106
dirkjanvw
closed
7 months ago
7
Prepare for release v1.1.4
#105
lcoombe
closed
8 months ago
0
Update log message
#104
lcoombe
closed
8 months ago
0
Large ntJoin refactor
#103
lcoombe
closed
1 year ago
0
Use packaging module to compare semantic versions for pybedtools
#102
lcoombe
closed
1 year ago
0
Prepare for release v1.1.3
#101
lcoombe
closed
1 year ago
0
Bugfix for cases where there are no output paths, and overlap=True
#100
lcoombe
closed
1 year ago
0
Prepare for release v1.1.2
#99
lcoombe
closed
1 year ago
0
Fix for newer pybedtools versions
#98
lcoombe
closed
1 year ago
0
ntJoin error: Sorted input specified, but the file has the following record with a different sort order than the genomeFile
#97
musaqa
closed
1 year ago
8
Update btllib dependency info
#96
lcoombe
closed
1 year ago
0
installation issue
#95
chunlinxiao
closed
1 year ago
7
Mann-Kendall gives error with Numpy 1.24
#94
COMInterop
closed
1 year ago
2
Refactoring - pylint fixes
#93
lcoombe
closed
1 year ago
0
Viral contigs
#92
ohan-Bioinfo
closed
2 years ago
4
Prepare for release v1.1.1
#91
lcoombe
closed
2 years ago
0
Remove packaged btllib, make it a dependency
#90
lcoombe
closed
2 years ago
0
Prepare for release v1.1.0
#89
lcoombe
closed
2 years ago
0
Unable to run ntJoin
#88
sunnyEV
closed
2 years ago
2
Update btllib to v1.4.4
#87
lcoombe
closed
2 years ago
0
Add overlap feature
#86
lcoombe
closed
2 years ago
0
/ebio/abt3/nyoungblut/.zshenv:.:1: no such file or directory: /ebio/abt3/nyoungblut/.cargo/env
#85
nick-youngblut
closed
2 years ago
7
I found a big problem in ntJoin script.
#84
Shokusei
closed
2 years ago
2
Add --len option to indexlr and update btllib
#81
vlad0x00
closed
2 years ago
1
CI fix
#80
lcoombe
closed
3 years ago
0
Prepare for release v1.0.8
#79
lcoombe
closed
3 years ago
0
Update btllib to 1.1.6
#78
vlad0x00
closed
3 years ago
1
Update btllib
#77
vlad0x00
closed
3 years ago
1
FileNotFoundError: [Errno 2] No such file or directory
#76
SuPrSh
closed
3 years ago
3
Code refactoring
#75
lcoombe
closed
3 years ago
0
Update btllib
#74
vlad0x00
closed
3 years ago
0
Update azure-pipelines.yml
#73
lcoombe
closed
3 years ago
0
cat: standard output: No such file or directory
#72
Krasnopeev
closed
3 years ago
3
source file is in invalid format
#71
Steven-Kemp
closed
3 years ago
5
Translocation after scaffolding based on reference genome
#70
wuxingbo1986
closed
3 years ago
2
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