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bcgsc
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pavfinder
:mag: Post Assembly Variants Finder
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add bash script for fusion-bloom
#24
kmnip
closed
2 years ago
0
Minor bug fixes
#23
kmnip
closed
2 years ago
0
provide support for conda
#22
kmnip
closed
2 years ago
9
how are "dup" vs "ITD" defined by pavfinder
#21
rhalperin
closed
2 years ago
1
Add conda recipe
#20
kmnip
closed
2 years ago
13
false negative with "cannot map to exon" in log
#19
rhalperin
opened
2 years ago
18
error in cmp_genome_coords: '<' not supported between instances of 'str' and 'int'
#18
rhalperin
closed
2 years ago
6
Error running tap2.py on example data: input file does not exist
#17
rhalperin
closed
2 years ago
3
FusionBloom KeyError - while running pavfinder
#16
think-o
closed
3 years ago
13
Fusion-bloom reporting "TypeError"
#15
Rohanbha
closed
3 years ago
2
Number of cpus used by pavfinder
#14
af8
closed
3 years ago
5
Error running pavfinder on a large sample
#13
af8
closed
3 years ago
5
FusionBloom - some cases generate error in minimap2 | samtools command
#12
af8
closed
3 years ago
3
Output
#11
yanlina0205
closed
3 years ago
2
AttributeError: 'NoneType' object has no attribute 'get_sequence'
#10
yanlina0205
closed
3 years ago
13
Run PV to detect transcriptome structural variants
#9
yanlina0205
closed
3 years ago
3
filter_fasta script generates erroneous "transcripts.filtered.fa"
#8
af8
closed
4 years ago
1
GTF problem with transcript_id record - KeyError: 'transcript_id'
#7
af8
closed
4 years ago
1
Example output files?
#6
stianlagstad
closed
4 years ago
2
fix filter_fasta
#5
gmarcais
closed
4 years ago
2
Fixed loading __version__ from pavfinder
#4
gmarcais
closed
4 years ago
2
KeyError on transcript ID
#3
mcmero
closed
5 years ago
9
python 3 support
#2
jplaverdure
closed
4 years ago
2
biobloomcategorizer: invalid option -- 'a'
#1
mcmero
closed
5 years ago
7