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bcm-uga
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pcadapt
Performing highly efficient genome scans for local adaptation with R package pcadapt v4
https://bcm-uga.github.io/pcadapt
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plot(x, option = "screeplot")
#94
DrGonEWilD
opened
1 day ago
3
population vector in pcadapt
#93
abilska
opened
2 weeks ago
3
truncated p-values
#92
polobby
closed
3 months ago
4
Can I use PCAadapt even if I don't have population structure?
#91
marce-herrera
closed
4 months ago
15
Too many NA values
#90
Lin012345
closed
4 months ago
9
How to obtain the specific sites of outliers
#89
xiangping2023
opened
5 months ago
4
Eigenvalues and pcadapt for pooledSeq
#88
mroesti
closed
6 months ago
2
Low explained Variance after LD clumping
#87
mehakmadhura
closed
6 months ago
18
Help for using pcadapt with poolseq data
#86
ElMujtarVeronica
closed
9 months ago
5
can not change Manhattan plot color
#85
WWz33
closed
6 months ago
3
PCADAPT error when higher K - can't compute SVD
#84
GabryS3
closed
9 months ago
6
MAF filters and p-value distribution.
#83
akamolphat
opened
1 year ago
8
Error: Can't compute SVD.
#82
jcaccavo
closed
1 year ago
0
Too many outliers
#81
sandyplus
opened
1 year ago
13
Identifying snp positions of putatitively selected loci
#80
jayyeam
closed
1 year ago
6
Allele frequency data can use in pcadapt?
#79
HengLiang1993
closed
1 year ago
5
pcadapt: variant(s) have been discarded as they are not SNPs
#78
KatherinOtalora
closed
1 year ago
5
probelm with missing values
#77
cyadrogarcia
closed
1 year ago
6
System is computationally singular error when using pcadapt on imported .bed file of simulated data
#76
jpfontenelle
closed
2 years ago
5
How to extract genetic matrix from pcadapt object Inbox
#75
jpfontenelle
closed
2 years ago
2
understanding pcadapt
#74
peter-civan
closed
2 years ago
5
SNP significance plot looks strange
#73
NickJeff13
closed
2 years ago
1
ERROR reading .bed file - can't compute SDV
#72
VanELuz
closed
2 years ago
0
Alternative to scree plot and score plot for K selection?
#71
jpfontenelle
closed
2 years ago
2
Pooled samples?
#70
Tigeeeeer
closed
3 years ago
1
Different sample size per population
#69
naborlozada
closed
3 years ago
4
outlier SNP IDs from output
#68
Sistrurus-Steve
closed
2 years ago
4
SNPs thinning LD clumping
#67
msalamon2
closed
3 years ago
1
How to get the genotype file
#66
hjt1129
closed
3 years ago
18
"missing values only" warning with data filtered to <0.1 missing values
#65
ewmorr
closed
3 years ago
6
Is the new version of PCAdapt applicable to reduced representation population genomic datasets with 1000's of markers?
#64
ptcooper
closed
3 years ago
1
Questions about K values
#63
weiwFu
closed
3 years ago
8
Merge SNP position, maf and P-values.
#62
Ray569743422
closed
3 years ago
5
Modify figures
#61
kuratanp
closed
3 years ago
3
Histogram of the P values
#60
domag
closed
3 years ago
6
Loadings
#59
mbrieuc
closed
3 years ago
12
Update plotUtils.R
#58
jbruxaux
closed
3 years ago
1
Data filtering before analysis
#57
aydaraliev
closed
3 years ago
12
Adding fake variants when you have too few.
#56
privefl
closed
3 years ago
0
selecting K's and filtering criteria to use
#55
BelenJM
closed
4 years ago
8
Importing loci ID
#54
marcticruz
closed
4 years ago
12
Remove Outliers from data
#53
kwojtusik
closed
4 years ago
1
How to obtain details of PCA drown by pcadapt
#52
Mary-00
closed
4 years ago
10
having memory issue when running PcAdapt with big data set
#51
shaghayeghsoudi
closed
4 years ago
12
Feature request: Polyploid data
#50
ahmaduaf
closed
4 years ago
3
LD clumping on Pool-Seq data
#49
apfuentes
closed
4 years ago
15
ERROR: Can't compute SVD
#48
jrglass6
closed
4 years ago
18
Great difference of outliers detection using same cutoffs pcadapt/OutFlanks
#47
MaraRMinano
closed
4 years ago
3
Singular values & proportion of explained variance
#46
YannDussert
closed
4 years ago
14
variant(s) have been discarded as they are not SNPs
#45
tjmcgreevy
closed
4 years ago
2
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