bcm-uga pcadapt issues - Githubissues

bcm-uga / pcadapt

Performing highly efficient genome scans for local adaptation with R package pcadapt v4

https://bcm-uga.github.io/pcadapt

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issues

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pcadapt() grabbing too many cores

#44 standard-aaron closed 4 years ago
5
Unexpected imputation in pcadapt.pcadapt_pool

#43 brandonlind closed 4 years ago
3
Question about obtaining z-scores

#42 kfarleigh closed 4 years ago
1
can't display the histogram as the values are too high.

#41 zillurbmb51 closed 4 years ago
6
Customized ttile of figure

#40 zillurbmb51 closed 5 years ago
2
Inconsistency between Fst and deltaDAF (derived allele frequency) with pcadapt

#39 Mary-00 closed 3 years ago
19
Problem interpreting strange results

#38 spencer411 closed 4 years ago
7
Problem loading haploid data?

#37 remco-stam closed 5 years ago
1
poolseq scaled vs non pca

#36 rsbrennan closed 5 years ago
2
Choosing the best K: screeplot vs. scoreplot

#35 ydorant closed 5 years ago
5
outliers detection issue

#34 CocoMlle closed 4 years ago
4
Is there a way to associate outliers with the populations they discriminate

#33 Ella-Bowles closed 5 years ago
2
Use mio instead of BH for memory-mapping

#32 privefl closed 5 years ago
0
pcadapt returned a bit odd results, please help!

#31 Mary-00 closed 5 years ago
23
error with vcf2pcadapt command

#30 fkatharina closed 5 years ago
8
Problems in identifying outliers

#29 abcosta closed 3 years ago
5
Error in R package pcadapt when trying to use "screeplot"

#28 LRobo000 closed 5 years ago
4
follow-up to issues #23 and #25, I can't visualize score plots with and without outliers

#27 Ella-Bowles closed 6 years ago
23
Introgression Analysis

#26 skitchen19 closed 6 years ago
1
as.matrix(read.table) still not working, even with other data types

#25 Ella-Bowles closed 6 years ago
2
confirming that result is sound

#24 Ella-Bowles closed 6 years ago
7
errors when I read a pcadapt file, and also when I try to convert to a matrix

#23 Ella-Bowles closed 6 years ago
3
General question - very low variation

#22 fvaux closed 6 years ago
5
Error in UseMethod("pcadapt") : no applicable method for 'pcadapt' applied to an object of class "character"

#21 Carol-Symbiomics closed 5 years ago
1
Incorporating biological replicates into analysis

#20 MarkCBitter closed 6 years ago
8
Formatting plots

#19 fvaux closed 6 years ago
4
scores plot with individual names

#18 devonorourke closed 4 years ago
6
updated file conversion?

#17 devonorourke closed 6 years ago
9
Failed install

#16 clinnen closed 6 years ago
6
Error during pcadapt fxn

#15 kbcn closed 6 years ago
20
K=1

#14 j-a-thia closed 4 years ago
2
Remove tutorials

#13 keurcien closed 6 years ago
0
pcadapt 4.0.0

#12 keurcien closed 6 years ago
0
Error using read.pcadapt(pool.data, type = "pool") - long vectors not supported yet

#11 apfuentes closed 6 years ago
17
read.pcadapt(pool.data, type = "pool") throws error

#10 jkreinz closed 4 years ago
14
BLAS/LAPACK routine 'DSYEVR' gave error code -9

#9 V-Z closed 6 years ago
4
read.pcadapt function broken from Github version

#8 devonorourke closed 6 years ago
5
feature request: extracting SNP positions; modifying plots

#7 devonorourke closed 4 years ago
3
LD

#6 keurcien closed 6 years ago
0
Issue raised by Mark Derbyshire

#5 keurcien closed 4 years ago
0
Matrices containing strings

#4 keurcien closed 4 years ago
0
Use warning instead of stop for argument deprecation

#3 zkamvar closed 7 years ago
1
Comment titles

#2 mblumuga closed 8 years ago
0
Tes Mike

#1 mblumuga closed 8 years ago
0