ben-laufer DMRichR issues

ben-laufer / DMRichR

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

https://www.benlaufer.com/DMRichR/

MIT License

39 stars 22 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Error in processing Bismark cytosine reports

#87 MinS1 closed 1 week ago
1
Error in `map()`

#86 mukhtarsadykov opened 3 weeks ago
0
Machine learning logical input error

#85 QvickA opened 1 month ago
0
processBismark Error

#84 Blondeau-Bidet opened 4 months ago
0
next step after add a custom genome

#83 Blondeau-Bidet opened 4 months ago
1
An error showed "'error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': 'mc.cores' > 1 is not supported on Windows"

#82 thsign7788 opened 9 months ago
2
Error during the adjustment covariate

#81 mukhtarsadykov closed 9 months ago
0
Confused about DMR annotation

#80 f6v closed 10 months ago
1
Modifications for curta + daphnia pulex genome

#79 wassimsalam01 closed 11 months ago
1
MethylDackel implementation

#78 bazyliszek closed 10 months ago
2
DMRichR::annotationDatabases()

#77 bazyliszek closed 10 months ago
2
Can I use this package for RRBS data & issue with running DMRichR::DM.R

#76 MiaSands closed 11 months ago
2
Using newer Ontology for enrichR

#75 dlabuz closed 11 months ago
1
Package maintenance

#74 ben-laufer closed 11 months ago
0
sampleNames(bs) == as.character(meta$Name) are not all TRUE

#73 dlabuz closed 11 months ago
1
Error in CMplot: :CMplot

#72 f6v closed 11 months ago
1
How do I point to files?

#71 f6v closed 11 months ago
2
Installation compatibility issues with BioCManager and r@4.1.x

#70 perrymil closed 1 year ago
4
Cannot install this package "ben-laufer / DMRichR" with error information

#69 DengEr-1993 closed 1 year ago
3
Large candidate regions with more than 1000 CpGs detected

#68 semenko closed 1 year ago
1
help for DMRrichR

#67 hmyh1202 closed 1 year ago
1
For the coverage?

#65 hmyh1202 closed 1 year ago
2
style specified by 'UCSC' error

#64 farmohh closed 1 year ago
2
cavPor genome

#63 farmohh closed 1 year ago
2
error Block analysis has produced an error

#62 sashulkaSh closed 2 years ago
3
Error with read.bismark ?

#61 Peter-Berube closed 2 years ago
1
DMRichR v1.7.3

#60 ben-laufer closed 2 years ago
0
Error in enrichment testing

#58 wb-yun closed 2 years ago
4
Error in h(simpleError(msg, call)) : error in evaluating the argument 'args' in selecting a method for function 'do.call': GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment

#57 wb-yun closed 2 years ago
6
Error selecting significant DMRs: "Error in beta/pi : non-numeric argument to binary operator"

#56 semenko closed 3 years ago
4
Add an optional caching feature

#55 semenko closed 3 years ago
3
ensembldb option

#54 ben-laufer closed 2 years ago
0
Add DM.R() and HOMER()

#53 ben-laufer closed 3 years ago
0
Modified saveExternal() to be prepareHOMER(). Fixes removal of df2bed().

#52 ben-laufer closed 3 years ago
0
GitHub Actions for R-CMD-check

#51 ben-laufer closed 3 years ago
0
Best practices updates based on devtools::check()

#50 ben-laufer closed 3 years ago
0
Finalizations for v1.6.1

#49 ben-laufer closed 3 years ago
0
Error in createCommonDmrsHeatmap / hclust

#48 semenko closed 3 years ago
7
DMRichR v1.6.1

#47 ben-laufer closed 3 years ago
0
DMRichR v1.6

#46 ben-laufer closed 3 years ago
0
Option to not run DMRichR::GOfuncR() in DM.R

#45 ben-laufer closed 3 years ago
1
REVIGO website update creating errors for DMRichR::REVIGO() and DMRichR::GOplot()

#44 ben-laufer closed 3 years ago
1
DMRichR v1.5

#43 ben-laufer closed 3 years ago
0
Updated methylLearn() machine learning and processBismark() sex checker

#42 hyeyeon-hwang closed 4 years ago
0
Dev

#41 ben-laufer closed 4 years ago
0
group_by_() > group_by()

#40 bazyliszek closed 4 years ago
5
Custom genomes

#37 ben-laufer closed 4 years ago
2
Install R package issue

#36 El-Castor closed 4 years ago
10
Cell Composition Estimation

#35 ben-laufer closed 4 years ago
0
Problem in testing for blocks of differential methylation

#34 StefaniaTuveri closed 4 years ago
2