3Dscript is a plugin for Fiji/ImageJ for creating 3D and 4D animations of microscope data. In contrast to existing 3D visualization packages, animations are not keyframe-based, but are described by a natural language-based syntax.
Find more information at https://bene51.github.io/3Dscript
Rendering of 200 frames of this data set will typically take less than a minute on an OpenCL-enabled Graphics Card. The resulting stack can be saved as a video file using Fiji's File>Save As>AVI... command.
To run the software on another data set, open a different image stack (instead of the T1 Head sample data) before running 3Dscript.
More information is available at https://bene51.github.io/3Dscript
Detailed usage information is available on the wiki.
Schmid, B.; Tripal, P. & Fraaß, T. et al. (2019), "3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax", Nature methods 16(4): 278–280, PMID 30886414.
Graphics card | Operating system |
---|---|
NVIDIA Quadro P2000 | Windows 10 |
NVIDIA Quadro M4000 | Windows 10 |
NVIDIA Quadro M2000 | Windows 10 |
NVIDIA Quadro K620 | Windows 10 |
NVIDIA Quadro K600 | Windows 10 |
NVIDIA Quadro K420 | Windows 7 |
NVIDIA GeForce GTX760 | Windows 7 |
AMD FirePro W5100 | Windows 7 |
Intel HD Graphics 4600 | Windows 7 |
Intel HD Graphics 4000 | Mac OS X |
Intel HD Graphics 5000 | Mac OS X |
Intel HD Graphics 530 | Windows 10 |