This GitHub Repository contains all files used to generate the paper Long-term care homes were hit hardest by 2023 disease outbreaks in Toronto healthcare facilities.
Some of the R code used to create this work was adapted from Alexander (2023).
The structure of this Repository is as follows:
inputs/data includes the raw data used in this investigation.inputs/literature includes copies of references used in this analysis.inputs/sketches includes sketches of the dataset and graphs used in this report.outputs/data includes the cleaned data used in this paper.outputs/paper includes a PDF version of the final paper, the Quarto file used to create the PDF, and a file containing the references for the paper.scripts includes R scripts for data simulation, downloading, cleaning, and testing.None of the components of this work involved the use of LLMs.