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bergmanlab
/
mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
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A question of ngs_mapper2 output file abount malformed.bed
#125
craftor18
opened
3 months ago
0
Repeate make annotation run after a preprocessing for --make_annotation
#124
craftor18
opened
4 months ago
7
How to Prepare Consensus Sequences
#123
Song-10-YF
opened
9 months ago
0
Snakefile is not on where is not suppose to be
#122
Tcvalenzuela
opened
9 months ago
0
Teflon Postprocessing Failure: Error: malformed BED entry at line 57. Start Coordinate detected that is < 0. Exiting.
#121
TobyBaril
opened
11 months ago
3
Error in rule repeatmask: can't find Repeatmasker output
#120
TobyBaril
closed
1 year ago
12
Issue running relocaTE2
#119
motto7
closed
1 year ago
5
thanks for making this
#118
tmcclintock
closed
1 year ago
1
About the consensus fasta file
#117
Song-10-YF
closed
1 year ago
2
Update documentation
#116
cbergman
closed
1 year ago
0
cannot import name '_aligners' from partially initialized module 'Bio.Align'
#115
rattei
closed
1 year ago
8
Install fixes for Relocate2 and TE-break
#114
cbergman
closed
1 year ago
0
Failed to solve conda environment for mcc_relocate2
#113
s-andrews
closed
1 year ago
6
Install fixes
#112
cbergman
closed
1 year ago
0
Summary output
#111
ebhmayra
closed
1 year ago
4
Problem with installing Temp and Relocate
#110
Psula23
closed
1 year ago
4
Update documentation branch
#109
cbergman
closed
1 year ago
0
Vcf
#108
JingxuanChen7
closed
1 year ago
0
RepeatMasker error
#107
ebhmayra
closed
1 year ago
14
Documentation
#106
JingxuanChen7
closed
1 year ago
0
Simulation
#105
JingxuanChen7
closed
1 year ago
0
Read name provided with no suffix in trimgalore.log
#104
dgodin19
opened
1 year ago
5
merge mcc_sim to mcclintock.yml
#103
JingxuanChen7
closed
1 year ago
0
Updated Mamba install command to exclude specific versions
#102
aam08331
closed
1 year ago
0
Mcclintock stuck on "prepping read" or "reference fasta created"
#101
dgodin19
closed
1 year ago
3
How to run mcclintock with a bash script?
#100
dgodin19
closed
1 year ago
3
Is there a way to speed up installation?
#99
dgodin19
closed
1 year ago
1
KeyError: 'ngs_te_mapper2'
#98
jingydz
closed
1 year ago
3
Error running mcclintock.py with testdata from download_test_data.py
#97
maxcoenen
closed
1 year ago
4
A question about running multi samples
#96
Morriyaty
closed
2 years ago
3
Integration of RelocaTE2 results into the relocate2_nonredundant.bed and summary files appears to be incorrect
#95
andreabours
opened
2 years ago
2
How to install tools manually ?
#94
Morriyaty
closed
2 years ago
3
java.lang.OutOfMemoryError error prompted by running te-locate
#93
andreabours
opened
2 years ago
4
Installation of ngs_te_mapper2 fails
#92
ValentinaBoP
closed
1 year ago
7
Improvements to component method conda environments
#91
cbergman
closed
2 years ago
0
Switch to using mamba for environment installation
#90
cbergman
closed
2 years ago
0
error after running testing dataset.
#89
yanhaidong1
closed
2 years ago
7
Error in rule repeatmask
#88
danicats
closed
2 years ago
5
Tebreak
#87
pbasting
closed
3 years ago
0
Running on test data fails; trimgalore encountering errors
#86
sbresnahan
closed
2 years ago
6
Config
#85
pbasting
closed
3 years ago
0
result files empty or not generated - ngs_te_mapper2 and popoolationTE2
#84
OctavioSerra
closed
2 years ago
6
Temp2
#83
pbasting
closed
3 years ago
0
Failed to solve scheduling problem with ILP solver
#82
ch8316f5eyu
closed
3 years ago
3
Question
#81
ohan-Bioinfo
closed
3 years ago
6
Install update
#80
pbasting
closed
3 years ago
0
Error trying to execute glpsol
#79
acontrerasg
closed
3 years ago
4
Ngs te mapper2
#78
pbasting
closed
3 years ago
0
Ngs te mapper2
#77
pbasting
closed
3 years ago
0
teflon error
#76
tomaszjacek
closed
3 years ago
17
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