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bergmanlab
/
mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
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git error (fatal: not a git repository (or any of the parent directories): .git)
#75
tomaszjacek
closed
3 years ago
5
Vcf
#74
pbasting
closed
3 years ago
0
Mapreads
#73
pbasting
closed
3 years ago
0
Development
#72
pbasting
closed
3 years ago
0
Bed changes
#71
pbasting
closed
4 years ago
0
Teflon
#70
pbasting
closed
4 years ago
0
Miss --make_annotations and --mem arguments
#69
yanhaidong1
closed
4 years ago
2
Reports
#68
pbasting
closed
4 years ago
0
Development
#67
pbasting
closed
4 years ago
0
Development
#66
pbasting
closed
4 years ago
0
Genotype or merge TIPs across samples?
#65
YTLogos
closed
4 years ago
2
ID problems in taxonomy and locations files
#64
acontrerasg
closed
4 years ago
6
Tepid
#63
pbasting
closed
4 years ago
0
Random error
#62
Thatguy027
closed
4 years ago
4
RelocaTE and RelocaTE2 run infinitely or freeze
#61
lhemmer
closed
4 years ago
38
Update methods
#60
pbasting
closed
4 years ago
0
Development
#59
pbasting
closed
4 years ago
0
Development
#58
pbasting
closed
4 years ago
0
The fasta consensus set of TE sequences
#57
YTLogos
closed
4 years ago
1
Refactor
#56
pbasting
closed
4 years ago
0
Investigate adding iMGEins
#55
cbergman
closed
2 years ago
0
Refactor branch consistently failing with test data on RelocaTE2
#54
davidecarlson
closed
4 years ago
6
Investigate adding PopoolationTE2
#53
cbergman
closed
4 years ago
0
No such file or directory
#52
Caro-Ca
closed
4 years ago
3
WARNING. chromosome (chrXV) was not found in the FASTA file. Skipping.
#51
Caro-Ca
closed
4 years ago
0
mcclintock.sh Segmentation fault
#50
mehmetdayi
closed
4 years ago
11
No such file or directory
#49
Caro-Ca
closed
4 years ago
23
install.sh: 108: install.sh: Syntax error: "(" unexpected (expecting "}")
#48
Caro-Ca
closed
4 years ago
11
Samplot
#47
shunhuahan
closed
5 years ago
0
RepeatMasker modifies some TE names
#46
gbdias
closed
5 years ago
0
Ngs
#45
shunhuahan
closed
6 years ago
0
Env
#44
shunhuahan
closed
6 years ago
0
Freq
#43
shunhuahan
closed
6 years ago
0
Sub
#42
shunhuahan
closed
6 years ago
0
Tmp
#41
shunhuahan
closed
6 years ago
0
Compile papers using McClintock pipeline
#40
cbergman
closed
1 year ago
10
Add note about multi-sample job submission
#39
shunhuahan
closed
6 years ago
0
Report
#38
shunhuahan
closed
6 years ago
0
Develop
#37
shunhuahan
closed
6 years ago
0
Error running RelocaTE with test data
#36
bnavarrodominguez
closed
6 years ago
9
Any chance RelocaTE could be replaced with RelocaTE2
#35
davidecarlson
closed
4 years ago
4
Samtools argument error in mcclintock.sh
#34
davidecarlson
closed
6 years ago
2
Develop
#33
shunhuahan
closed
6 years ago
0
Develop
#32
shunhuahan
closed
6 years ago
0
Investigate adding Grasper
#31
cbergman
closed
2 years ago
0
Investigate adding STEAK
#30
cbergman
closed
2 years ago
0
Add sample allele frequency information to BED output when available
#29
cbergman
closed
5 years ago
3
Investigate adding TEFLON
#28
cbergman
closed
4 years ago
0
Investigate adding TEPID
#27
cbergman
closed
4 years ago
0
Investigate adding SPLITREADER
#26
cbergman
closed
4 years ago
0
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