beyondpie CEMBA_wmb_snATAC issues

beyondpie / CEMBA_wmb_snATAC

Whole mouse brain snATAC seq analysis

MIT License

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issues

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TODO: provide cell meta directly in the repo

#21 beyondpie closed 3 weeks ago
1
cellType cov weighted loss function is ambiguous

#18 GitHUB-ZYD closed 3 months ago
2
Integration with MERFISH to provide spatial results.

#17 beyondpie opened 3 months ago
0
update README to include how we generate each figure

#16 beyondpie opened 3 months ago
0
Upload liftOver-related codes and data for conservation analysis

#15 beyondpie opened 4 months ago
0
Provide region-specific cCREs (and enhancers) cluster-specific cCREs (and enhancers)

#14 beyondpie opened 5 months ago
0
Provide GithubPage like Allen's whole mouse brain

#13 beyondpie opened 6 months ago
0
Consultation on snATAC-seq Data Analysis for differential peak analysis

#12 RuiyuRayWang closed 5 months ago
7
share the supplementary data with more details

#11 beyondpie closed 7 months ago
1
data

#10 gouxiaojuan closed 8 months ago
6
provide bedpe files like 2021 format.

#9 beyondpie closed 6 months ago
11
PanicException: called `Result::unwrap()` on an `Err` value: H5Dread(): can't read data: file read failed

#8 jayluo2 closed 10 months ago
19
provide both L4-cluster level and subclass-level bed files.

#7 beyondpie opened 11 months ago
0
RuntimeError: neither 'fragment_single' nor 'fragment_paired' is present in the '.obsm'

#6 jayluo2 closed 11 months ago
10
rename 17, 18, 19 directory labels in codes

#5 beyondpie opened 1 year ago
0
organize 00.data preprocess

#4 beyondpie closed 9 months ago
1
figure 1

#3 wkl1990 closed 1 year ago
1
revise readme and fig5

#2 wkl1990 closed 1 year ago
0
rename directory

#1 wkl1990 closed 1 year ago
0