where is nanostring_functions.R?

Hi Bihui,

Those functions should be in the R package: https://github.com/bhattacharya-a-bt/NanoNormIter.

Thanks! Arjun

Arjun Bhattacharya, PhD Postdoctoral Fellow Department of Pathology and Laboratory Medicine Computational Medicine Institute for Quantitative and Computational Biosciences David Geffen School of Medicine University of California, Los Angeles

On Fri, Mar 4, 2022 at 1:09 PM bihuimel @.***> wrote:

Dear All,

I can't find the nanostring_functions.R file. I tried nanostring_RUV_functions.R. However, running the code below gave me an error. for (i in 1:length(files.RCC.COV)){ rcc = readRcc(files.RCC.COV[i]) raw = rcc$Code_Summary raw_expression[,i+2] = as.numeric(raw$Count) colnames(rawexpression)[i+2] = strsplit(files.RCC.COV[i], '')[[1]][1] pData[i,2:7] = as.vector(rcc$Sample_Attributes) pData$imagingQC[i] = imagingQC(rcc) pData$bindingDensityQC[i] = bindingDensityQC(rcc,.05,2.25) pData$limitOfDetectionQC[i] = limitOfDetectionQC(rcc) pData$positiveLinearityQC[i] = positiveLinQC(rcc) }

The error is: Error in readRcc(files.RCC.COV[i]) : could not find function "readRcc".

Thanks. Bihui

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bhattacharya-a-bt / CBCS_normalization

where is nanostring_functions.R? #4

Thanks! Arjun