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bhklab
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readii
Radiomic Extraction and Analysis for DICOM Images (READII)
MIT License
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Create readii-IDC repository for notebooks
#64
strixy16
opened
1 day ago
0
Fresh run of readii on HNSCC on H4H
#63
strixy16
opened
1 day ago
0
Update randomized_sampled to just be called sampled
#62
strixy16
opened
4 days ago
0
Separate the ROI and type for negative control input
#61
strixy16
opened
4 days ago
1
need some kind of logger documentation
#60
strixy16
opened
1 week ago
1
feat: improve logging + make verbose
#59
jjjermiah
opened
2 weeks ago
2
fix: add readii cli entry point to pyproject
#58
jjjermiah
closed
2 weeks ago
2
record HNSCC UHN RADCURE Challenge model results in data and analysis spreadsheet
#57
strixy16
closed
1 day ago
0
Dataset Checklist for READII usage
#55
strixy16
opened
3 weeks ago
0
Nothing wrong with this function and hasnt caused any issues (i think)
#54
jjjermiah
opened
3 weeks ago
1
Email TCIA about removing RADCURE phase 1
#52
strixy16
opened
3 weeks ago
0
feat: remove dicom-parser, update mit, deprecate padSeg
#51
jjjermiah
closed
3 weeks ago
2
IDC notebook B
#50
strixy16
opened
3 weeks ago
0
IDC notebook A
#49
strixy16
opened
3 weeks ago
0
Update ROI inputs to be dictionary
#48
strixy16
opened
3 weeks ago
0
Submit abstract to ESTRO
#47
strixy16
closed
2 days ago
0
Validate-MIT generated Nifti if loading in Readii to use instead of dicoms
#45
jjjermiah
opened
1 month ago
0
Implementing the nifti stuff
#44
jjjermiah
opened
1 month ago
1
Refactor Feature Extraction Workflow to Modularize Preprocessing, Extraction, and Output Management
#43
jjjermiah
opened
1 month ago
0
feat: Enhance CI/CD Workflow with TestPyPI Publishing, Linting Improvements, and minor docs update
#42
jjjermiah
closed
1 month ago
2
deps: `dicom-parser`
#41
jjjermiah
closed
3 weeks ago
2
feat: Use Pixi, pyradiomics fork
#40
jjjermiah
closed
1 month ago
1
Negative control error handling
#39
strixy16
closed
1 month ago
0
Negative control error catching and angular commit syntax
#38
strixy16
closed
1 month ago
0
Created keep_running flag
#37
Mogtaba-Alim
closed
2 months ago
0
Change original image output name convention
#36
strixy16
closed
2 months ago
0
fix: Remove coloredlogs dependency and logging configuration from the project
#35
jjjermiah
closed
2 months ago
0
fix(feature_extraction): add try except around actual feature extract…
#34
strixy16
closed
3 months ago
0
fix: type annotations & refactor typing issues
#33
jjjermiah
closed
3 months ago
0
`read_dicom_auto` can return any one of `(Scan | PET | StructureSet | Dose | Segmentation | None)`
#32
strixy16
closed
1 month ago
2
feat: Add_logging
#31
jjjermiah
closed
3 months ago
0
fix(feature_extraction): missed variable name change for non-cropped …
#30
strixy16
closed
3 months ago
0
refactor(feature_extraction): move cropping to after negative control…
#29
strixy16
closed
3 months ago
0
fix(feature_extraction): update negative control component splitting …
#28
strixy16
closed
3 months ago
0
fix(feature_extraction): negative control component split wouldn't wo…
#27
strixy16
closed
3 months ago
0
Improved efficiency negative control functions
#26
strixy16
closed
3 months ago
0
New get CT with RTSTRUCTs function
#25
strixy16
closed
3 months ago
0
New CT to RTSTRUCT matching method and start of testing new negative control generation method
#24
strixy16
closed
3 months ago
0
Adding negative control to main pipeline and feature extraction functions
#23
strixy16
closed
5 months ago
0
HNSCC data throwing index out of bounds error in getROIVoxel Label
#22
strixy16
opened
6 months ago
0
fix: update readme with docker link
#21
jjjermiah
closed
6 months ago
0
displayCTSegOverlay breaks if sliceIdx for original image is passed when crop is True
#20
strixy16
opened
6 months ago
0
Adding random seed to all negative controls for reproducible results
#19
strixy16
closed
6 months ago
1
benchmarking negative controls
#18
strixy16
opened
8 months ago
0
refactor: Fixes, updates, formatting
#17
jjjermiah
closed
8 months ago
0
pip install on linux not working
#16
jjjermiah
closed
5 months ago
1
Refactor: Add dockerfile, fix some type errors, update type annotations, add some error-handling, formatting
#15
jjjermiah
closed
8 months ago
0
Another fix for catching no segmentation type error
#14
strixy16
closed
8 months ago
0
fix (pipeline): catch error when there are no suitable segmentation types in the imgtools csv
#13
strixy16
closed
8 months ago
0
Added ROI Name Quality Check for Negative Controls
#12
Mogtaba-Alim
closed
9 months ago
0
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