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bids-apps
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freesurfer
BIDS app wrapping recon-all from FreeSurfer
Apache License 2.0
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Update to version 6.0.1
#36
chrisgorgo
closed
6 years ago
0
skip subject only if last freesurfer output is present
#35
ntraut
closed
6 years ago
3
Bypass bids_validator
#34
egarza
closed
7 years ago
7
Skip vols in study template
#33
chrisgorgo
closed
7 years ago
0
put version and run.py in the same folder
#32
ntraut
closed
7 years ago
1
use python 2 for freesurfer scripts
#31
ntraut
closed
7 years ago
2
Issue #29
#30
ntraut
closed
7 years ago
8
Step decomposition in longitunal studies
#29
ntraut
closed
7 years ago
2
handle missing t1w nii for a subject or session
#28
fliem
closed
7 years ago
0
updated links in CI for precomputed test data to FS 6.0.0
#27
fliem
closed
7 years ago
0
Export of group-level tables for aparc- and aseg-stats
#26
fliem
closed
7 years ago
4
force recomputation
#25
fliem
closed
3 years ago
6
fixes behav in singl-session-subjects in long study
#24
fliem
closed
7 years ago
4
longitudinal tests
#23
fliem
closed
7 years ago
0
fixes behav in singl-session-subjects in long study
#22
fliem
closed
7 years ago
2
Adding acq_label option for T2/FLAIR inclusion
#21
alexlicohen
closed
7 years ago
1
T2 and T2 failure modes with multiple input
#20
alexlicohen
closed
7 years ago
5
Group tables
#19
fliem
closed
7 years ago
6
Pass-through parameters
#18
chrisgorgo
opened
7 years ago
1
Support for `-hires`
#17
chrisgorgo
closed
7 years ago
0
Update to FreeSurfer 6.0.0
#16
chrisgorgo
closed
7 years ago
12
remove travis integration
#15
chrisgorgo
closed
7 years ago
0
Added FSL-core from the BIDS-Apps templates
#14
alexlicohen
closed
7 years ago
0
FSL required for: Pial Refinement, diffusion functions, and TRACULA
#13
alexlicohen
closed
7 years ago
5
updated run.py for multiday combinations
#12
alexlicohen
closed
7 years ago
0
Longitudinal vs multi-day 'sessions'
#11
alexlicohen
closed
7 years ago
3
Resolves Issue #7: rmtree now based on "IsRunning"
#10
alexlicohen
closed
7 years ago
4
QA
#9
fliem
opened
7 years ago
24
Resolves Issue #5
#8
alexlicohen
closed
7 years ago
10
rmtree removal
#7
alexlicohen
closed
7 years ago
4
Added autorecon stages for manual correction.
#6
alexlicohen
closed
7 years ago
1
-FLAIR and -FLAIRpial options should be added
#5
alexlicohen
closed
7 years ago
1
long stream for single session subjects in long studies
#4
fliem
closed
7 years ago
3
Enh/tag version
#3
chrisgorgo
closed
8 years ago
0
Don't run the longitudinal workflow if there is only one session present
#2
chrisgorgo
closed
8 years ago
0
Update README.md
#1
armaneshaghi
closed
8 years ago
1
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