pquantR is a python and R package to perform downstream analysis of proteomicsLFQ quantitative data. It also included R shiny application which is designed to do the downstream analysis of proteomics dataset, currently these figures are included: Heatmap, Volcano Plot, QC plot.
Because the application is in developing, the test figures are drawn by test R packages separately now.
The build.sh
bash script use conda and mamba to install the environment to install all the dependencies and packahes in python and R.
Prerequisites:
After the installation of conda and mamba you can run the following script:
$> source build.sh
pquantR
folder from this page and put it in a suitable working path.app.R
in the folder, and you could run it in the following ways.