bigdatagenomics bdg-formats issues

bigdatagenomics / bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

Apache License 2.0

38 stars 36 forks source link

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Update avro dependency version to 1.12.0

#221 heuermh opened 1 month ago
0
update avro dependency version to 1.12.0

#220 heuermh opened 1 month ago
1
Documentation comment vs multiline comment warnings

#219 heuermh closed 8 months ago
1
Bump org.apache.avro:avro from 1.11.1 to 1.11.3

#218 dependabot[bot] closed 8 months ago
0
Migrate CI from Travis to Github Actions

#217 heuermh closed 1 year ago
0
Migrate CI from Travis to Github Actions

#216 heuermh closed 1 year ago
0
Update Avro dependency version to 1.11.1

#215 heuermh closed 1 year ago
0
Fix avro-maven-plugin version 1.11.1 warnings

#214 heuermh closed 1 year ago
1
Update Avro dependency version to 1.11.1

#213 heuermh closed 1 year ago
0
Update pom.xml url to Github repository

#212 heuermh closed 2 years ago
0
Update pom.xml url to Github repository

#211 heuermh closed 2 years ago
0
Update github-changes-maven-plugin version to 1.2

#210 heuermh closed 2 years ago
0
[FORMATS-208] Add proteinId field to Feature

#209 heuermh closed 3 years ago
0
Add proteinId field to Feature

#208 heuermh closed 3 years ago
0
Update avro dependency version to 1.10.2

#207 heuermh closed 3 years ago
0
[FORMATS-205] Add sample to Sequence, Slice, and Read

#206 heuermh closed 3 years ago
0
Add sample to Sequence, Slice, and Read

#205 heuermh closed 3 years ago
0
Update maven plugin dependency versions

#204 heuermh closed 3 years ago
0
[FORMATS-202] Add impact, strand, ref/alt coding sequence, ref/alt protein sequence to TranscriptEffect

#203 heuermh closed 3 years ago
0
Add impact, strand, ref/alt protein sequence, ref/alt coding sequence to TranscriptEffect

#202 heuermh closed 3 years ago
0
Fix typo in contributing doc

#201 heuermh closed 4 years ago
0
Minor updates to readme

#200 heuermh closed 4 years ago
0
[FORMATS-197] Update release script to update changelog

#199 heuermh closed 4 years ago
0
[FORMATS-196] Update changelog for versions 0.14.0 and 0.15.0

#198 heuermh closed 4 years ago
0
Update release script to update changelog

#197 heuermh closed 4 years ago
0
Changelog is missing versions 0.14.0 and 0.15.0

#196 heuermh closed 4 years ago
0
[FORMATS-194] Enable Travis for CI build

#195 heuermh closed 4 years ago
0
Migrate CI build to Travis or Github Actions

#194 heuermh closed 4 years ago
0
[FORMATS-192] Use direct Jenkins build status link.

#193 heuermh closed 4 years ago
2
Jenkins build status icon link is broken

#192 heuermh closed 4 years ago
1
Add record definition for VCF header

#191 heuermh closed 4 years ago
1
Use private field visibility in generated source.

#190 heuermh closed 4 years ago
2
Add encoded sequence and sequence encoding.

#189 heuermh closed 3 years ago
3
[FORMATS-164] Rename AlignmentRecord to Alignment.

#188 heuermh closed 4 years ago
1
[FORMATS-182] Add barcodes field to ReadGroup

#187 heuermh closed 5 years ago
2
[FORMATS-181] Use qualityScores for base quality scores

#186 heuermh closed 5 years ago
1
[FORMATS-184] Snapshot version should be 0.14.0-SNAPSHOT

#185 heuermh closed 5 years ago
1
Snapshot version should be 0.14.0-SNAPSHOT

#184 heuermh closed 5 years ago
0
Add record definition for VariantContext

#183 heuermh closed 4 years ago
1
Add barcodes field to ReadGroup

#182 heuermh closed 5 years ago
3
Alignment record quality vs Read qualityScores

#181 heuermh closed 5 years ago
0
[FORMATS-179] Use additionalJOptions element instead of additionalparam.

#180 heuermh closed 5 years ago
0
Javadoc errors in generated code cause release to fail

#179 heuermh closed 5 years ago
0
Release version 0.12.0

#178 heuermh closed 5 years ago
1
Updating CHANGES.md

#177 heuermh closed 5 years ago
1
[FORMATS-106] Refactor Genotype and GenotypeAnnotation.

#176 heuermh closed 3 years ago
7
Refactor AlignmentRecord, RecordGroup, and ProcessingStep

#175 heuermh closed 5 years ago
1
[FORMATS-173] Remove quality score variant

#174 heuermh closed 5 years ago
1
Remove quality score variant

#173 heuermh closed 5 years ago
0
Re-add reference.assembly field.

#172 heuermh closed 5 years ago
1