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bigdatagenomics
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bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Apache License 2.0
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Update avro dependency version to 1.8.2.
#171
heuermh
closed
5 years ago
1
Add sampleId for Feature record
#170
heuermh
closed
5 years ago
1
Release version 0.11.4
#169
heuermh
closed
5 years ago
1
[FORMATS-165] Support JDKs 9 and above.
#168
heuermh
closed
6 years ago
2
[FORMATS-170] Add sampleId to Feature record
#167
akmorrow13
closed
5 years ago
4
compilation fails on jdk 9 [https://github.com/bigdatagenomics/bdg-fo…
#166
sreev
closed
6 years ago
4
jdk 9 compilation fails
#165
sreev
closed
6 years ago
2
Rename AlignmentRecord --> Alignment or similar
#164
heuermh
closed
4 years ago
0
[FORMATS-160] Adding API documentation link and badge.
#163
heuermh
closed
6 years ago
1
[FORMATS-159] Clean up fields and doc in fragment.
#162
heuermh
closed
5 years ago
2
AlignmentRecord.attributes should be map<string>
#161
heuermh
closed
6 years ago
1
Add API documentation link and badge
#160
heuermh
closed
6 years ago
0
Clean up fields in Fragment
#159
fnothaft
closed
5 years ago
2
ADAM Extension to precision medecine
#158
fbelghait
closed
5 years ago
1
Adding code of contact adapted from the Contributor Convenant, version 1.4.
#157
heuermh
closed
6 years ago
2
Flatten VariantAnnotation and GenotypeAnnotation
#156
heuermh
closed
3 years ago
1
Update AlignmentRecord field docs with mappings to SAM spec where appropriate
#155
heuermh
closed
5 years ago
1
[FORMATS-43] Rename contig to reference.
#154
heuermh
closed
5 years ago
1
[FORMATS-142] Replace NucleotideContigFragment with Sequence and Slice
#153
heuermh
closed
5 years ago
3
Release version 0.11.3
#152
heuermh
closed
6 years ago
1
Migrate bdg-formats to new adam-formats module
#151
heuermh
closed
3 years ago
1
[FORMATS-149] Add splitFromMultiallelic to Variant.
#150
fnothaft
closed
7 years ago
2
Add splitFromMultiallelic to Variant
#149
fnothaft
closed
7 years ago
0
Release version 0.11.2
#148
heuermh
closed
7 years ago
3
[FORMATS-146] Add variant quality field.
#147
fnothaft
closed
7 years ago
6
Add quality field to variant
#146
fnothaft
closed
7 years ago
5
[FORMATS-144] Move genotype likelihood fields to doubles.
#145
fnothaft
closed
7 years ago
2
Floats for genotype likelihoods can underflow
#144
fnothaft
closed
7 years ago
0
Lengthen "abbreviated" field names
#143
Gasta88
closed
5 years ago
5
Replace NucleotideContigFragment with Sequence and Slice
#142
heuermh
closed
5 years ago
0
Add totalLength, index, and slices to Slice
#141
heuermh
closed
7 years ago
1
[FORMATS-141] Add totalLength, index, and slices to Slice.
#140
heuermh
closed
7 years ago
4
[FORMATS-138] Rename NucleotideContigFragment start/end fields.
#139
fnothaft
closed
7 years ago
5
Rename start/end fields in NucleotideContigFragment
#138
fnothaft
closed
7 years ago
7
Rename RecordGroupMetadata --> RecordGroup
#137
heuermh
closed
7 years ago
1
[FORMATS-135] Store the total contig length with a nucleotide contig …
#136
fnothaft
closed
7 years ago
2
Add back contig length to NucleotideContigFragment
#135
fnothaft
closed
7 years ago
1
[FORMATS-114] Add processing description record.
#134
fnothaft
closed
7 years ago
5
Add program record equivalent
#133
fnothaft
closed
7 years ago
1
[FORMATS-127] Use contigName instead of contig
#132
heuermh
closed
7 years ago
3
[FORMATS-115] Remove AlignmentRecord.mateAlignmentEnd
#131
heuermh
closed
7 years ago
2
All "original" fields should have the same prefix
#130
fnothaft
closed
5 years ago
2
Fix case for default Strand
#129
heuermh
closed
7 years ago
1
Default Strand uses wrong case
#128
heuermh
closed
7 years ago
0
NucleotideContigFragment uses `contig` instead of `contigName`
#127
fnothaft
closed
7 years ago
2
Lengthen "abbreviated" field names
#126
fnothaft
closed
5 years ago
6
[FORMATS-124] Add field for generic non-reference allele.
#125
fnothaft
closed
7 years ago
2
Variant should store whether it has a non-ref model
#124
fnothaft
closed
7 years ago
1
Add attributes map field to Sequence, Slice, Read records
#123
heuermh
closed
7 years ago
3
Add attributes map field to Sequence, Slice, Read records
#122
heuermh
closed
7 years ago
0
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