issues
search
bigdatagenomics
/
workflows
Toil workflows for bigdatagenomics tools. Apache 2 licensed.
http://www.bdgenomics.org
Apache License 2.0
5
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bump pyyaml from 3.11 to 5.4
#35
dependabot[bot]
closed
3 years ago
0
Bump pyyaml from 3.11 to 5.1
#34
dependabot[bot]
closed
3 years ago
1
Update deca workflow to run coverage calculation in local mode
#33
fnothaft
opened
6 years ago
0
Doc commands have incorrect syntax
#32
heuermh
opened
7 years ago
1
No call_cannoli function
#31
akmorrow13
opened
7 years ago
1
Adding code of contact adapted from the Contributor Convenant, version 1.4.
#30
heuermh
closed
7 years ago
1
Added mango workflow
#29
akmorrow13
opened
7 years ago
0
[WORKFLOWS-27] Add note about python 2 vs. 3 support.
#28
fnothaft
closed
7 years ago
0
Add note about Python 2 vs. 3
#27
fnothaft
closed
7 years ago
0
Allow latest toil verison.
#26
fnothaft
closed
7 years ago
0
Add docs requrements, fix toil version hardcode in setup.py.
#25
fnothaft
closed
7 years ago
0
Add fulltoc vendor lib.
#24
fnothaft
closed
7 years ago
0
Rewrite README as RST.
#23
fnothaft
closed
7 years ago
0
Add README and documentation
#22
fnothaft
closed
7 years ago
0
Setup readthedocs and add workflow docs
#21
fnothaft
closed
7 years ago
0
Add CITATION.md file
#20
fnothaft
opened
7 years ago
0
[WORKFLOWS-16] Add toil based pipeline for running DECA.
#19
fnothaft
closed
7 years ago
1
[WORKFLOWS-17] Rebase toil-lib on top of bdgenomics.workflows.
#18
fnothaft
closed
7 years ago
0
Pull in parts of toil-lib that we touch a lot
#17
fnothaft
closed
7 years ago
0
Add DECA pipeline
#16
fnothaft
closed
7 years ago
0
Stitch together benchmarking pipelines
#15
fnothaft
opened
7 years ago
0
[TOIL-BDG-13] Add single node benchmarks.
#14
fnothaft
closed
7 years ago
0
Add per-transformAlignments tool benchmarking suites
#13
fnothaft
closed
7 years ago
0
Use consistent package name WRT ADAM
#12
fnothaft
closed
7 years ago
0
Add GATK3 benchmarking scripts, and single node ADAM script
#11
fnothaft
closed
7 years ago
0
Add GATK stages for benchmarking
#10
fnothaft
closed
7 years ago
0
Features/requirements for Be The Match collaboration
#9
heuermh
opened
7 years ago
3
adding transform_alignments
#8
heuermh
closed
7 years ago
1
Log stage timings
#7
fnothaft
closed
7 years ago
1
Create single machine FASTQ->VCF script
#6
rcurrie
closed
7 years ago
0
Stitch pipelines together
#5
fnothaft
opened
7 years ago
0
Add Avocado trio calling pipeline
#4
fnothaft
opened
7 years ago
0
Add a README
#3
fnothaft
closed
7 years ago
0
Add BWA-on-Spark/Cannoli workflow
#2
fnothaft
closed
7 years ago
0
Add Avocado single sample workflow
#1
fnothaft
closed
7 years ago
0