Tooling for connecting GitLab, pipelines, and SODAR at CUBI.
Prerequisites when using conda:
$ conda create -n cubi-tk python=3.10
$ conda activate cubi-tk
Clone CUBI-TK and install.
$ git clone git@github.com:bihealth/cubi-tk.git
$ cd cubi-tk
$ pip install -e .
$ pip install -r requirements/develop.txt
$ cd docs_manual
$ make clean html
$ ls _build/html/index.html
$ cat >>~/.bashrc <<"EOF"
eval "$(register-python-argcomplete cubi-tk)"
EOF