bihealth / sodar-server

SODAR: System for Omics Data Access and Retrieval
https://github.com/bihealth/sodar-server
MIT License
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Invalid alternative root path forming in IrodsAPI.get_path() #1889

Closed mikkonie closed 9 months ago

mikkonie commented 9 months ago

Another yak shaving session initiated, this time while fixing #1888. In IrodsAPI.get_path(), if IRODS_ROOT_PATH is set we form an invalid path. The path is returned as /zone/projects/$IRODS_ROOT_PATH/etc instead of /zone/$IRODS_ROOT_PATH/projects/etc.

Obviously, current tests fail to detect this, so I'll need to update them as well.

mikkonie commented 9 months ago

Fixed.