Discussed with @Nicolai-vKuegelgen. The IGV file omission settings need to be updated as follows:
Allow glob patterns with e.g. wildcards for the file names to be omitted
Take in consideration the full path below sample_data for each file, instead of only the file name
Existing values without patterns can be considered to have an asterisk in front of them, e.g. omit.bam becomes *omit.bam. They'll still work the same way
Defaults in the Django settings should be amended with an asterisk.
Unless I'm missing something major, this seems like a very trivial update to make and it could be easily fit into the current v0.14.2 release.
Notes
Refactor get_igv_omit_override()
Modify check_igv_file_name() into check_igv_file_path(), provide path instead of name
Discussed with @Nicolai-vKuegelgen. The IGV file omission settings need to be updated as follows:
sample_data
for each file, instead of only the file nameomit.bam
becomes*omit.bam
. They'll still work the same wayUnless I'm missing something major, this seems like a very trivial update to make and it could be easily fit into the current v0.14.2 release.
Notes
get_igv_omit_override()
check_igv_file_name()
intocheck_igv_file_path()
, provide path instead of name