Add single cell assay sub-app(s)

bihealth / sodar-server

SODAR: System for Omics Data Access and Retrieval

https://github.com/bihealth/sodar-server

MIT License

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Add single cell assay sub-app(s) #572

Open mikkonie opened 5 years ago

mikkonie commented 5 years ago

@mkuhring will provide further specifications later.

It might be two apps, one for genomics and one for transcriptomics.

TBD: Exact specs, schedule, etc.

mikkonie commented 2 years ago

We have a number of single cell projects in production at the moment and they seem to be using the standard dna_sequencing plugin.

Is there a need for a specific assay plugin? If so, what would be the specs?

mikkonie commented 2 years ago

In GitLab by @mkuhring on Dec 9, 2021, 22:16

Honestly, I'm pretty out of the topic right now. But as long as there are no special/additional requirements, I'm not sure if there is a need for a separate app. Single cell is sequencing after all. Maybe @benedikt.obermayer has some requirements. Otherwise, I'm happy to continue this discussion maybe in January. Would need to get back into topic a bit.