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bio-miga
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miga
MiGA: Microbial Genomes Atlas
Artistic License 2.0
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miga init error, Failed to install pyhmerr
#180
tryfon
opened
3 months ago
1
Error when uploading Genome on NCBI Prok
#177
aaronlohar
closed
3 months ago
1
Allow for query distances to run against empty projects
#176
lmrodriguezr
closed
4 months ago
0
Web server results download
#175
ranitori
closed
3 months ago
2
Fix code scanning alert - Polynomial regular expression used on uncontrolled data
#174
lmrodriguezr
closed
7 months ago
0
Fix code scanning alert - Polynomial regular expression used on uncontrolled data
#173
lmrodriguezr
closed
7 months ago
0
Plasmids and Remote Overhaul
#172
lmrodriguezr
closed
7 months ago
0
fail to run in the colab
#171
Yun-Tianming
closed
7 months ago
3
new miga version not working for conda env
#170
jianshu93
opened
1 year ago
2
gzip -> pigz
#169
lmrodriguezr
closed
3 months ago
1
ruby: not found
#168
gwL955
opened
1 year ago
5
Create database
#167
gwL955
opened
1 year ago
6
Add `clean_distances!` to the end of `distances` step
#166
lmrodriguezr
opened
1 year ago
0
Low-identity FastAAI values resulting in AAI = 0
#165
lmrodriguezr
closed
1 year ago
0
Add citations to each step in the manual
#163
lmrodriguezr
opened
1 year ago
0
Allow pre-classification with other databases
#162
lmrodriguezr
opened
1 year ago
0
Quality categories not in line with community standards
#161
lmrodriguezr
closed
1 year ago
0
MyTaxa Scan cannot be requested for query datasets
#159
lmrodriguezr
closed
1 year ago
0
Quality (essential genes) only reporting for 23 essential genes
#160
kkowalden
closed
1 year ago
1
NCBI Prok Project not available
#158
schoolprojectshere
closed
1 year ago
0
miga quality_wf and derep_wf not working for archaea genomes
#157
jianshu93
closed
1 year ago
1
FastAAI crystals
#156
lmrodriguezr
closed
1 year ago
0
Implement FastAAI crystals
#155
lmrodriguezr
closed
1 year ago
0
`miga get` conflict between `--file` and `--db`
#154
lmrodriguezr
closed
6 months ago
1
Test coverage for SeqCode Registry remote access
#153
lmrodriguezr
opened
1 year ago
0
Add database information to `taxonomy` step
#152
lmrodriguezr
opened
1 year ago
0
Misleading error on get_db with --reuse-archive option
#151
romangr
closed
1 year ago
0
Incorporate tRNA scanning
#150
lmrodriguezr
closed
1 year ago
0
Get data/metadata from SeqCode
#149
lmrodriguezr
closed
1 year ago
0
Test coverage for GTDB remote access
#148
lmrodriguezr
opened
1 year ago
0
Get GTDB type designation
#147
lmrodriguezr
opened
1 year ago
0
FastQ offset
#146
lmrodriguezr
opened
1 year ago
0
Report all rRNAs
#145
lmrodriguezr
closed
1 year ago
0
Download data/metadata from GTDB
#144
lmrodriguezr
closed
1 year ago
0
Logs should report software versions used
#143
lmrodriguezr
opened
2 years ago
0
`miga get_db` should unarchive to a temporary folder and then replace the database
#142
lmrodriguezr
opened
2 years ago
1
Implement `cleanup` action
#141
lmrodriguezr
opened
2 years ago
0
Added query dataset is displayed as reference
#140
romangr
closed
2 years ago
1
Bring back Ruby 3.0 tests
#139
lmrodriguezr
closed
2 years ago
0
Fastaai2
#138
lmrodriguezr
closed
2 years ago
0
`seqtk` missing from the `apt-get` manual
#137
lmrodriguezr
opened
2 years ago
0
Homebrew: adoptopenjdk -> temurin
#136
lmrodriguezr
closed
2 years ago
0
FastAAI new version to MiGA
#135
lmrodriguezr
closed
2 years ago
0
Add ANI to `taxonomy`
#134
lmrodriguezr
opened
3 years ago
0
Can not open the webpage of MiGA Online
#133
Yu-Tzu
closed
2 years ago
0
Add daemon settings to launch project-wide jobs
#132
lmrodriguezr
closed
2 years ago
0
Wrong colab notebook for Brew
#131
lmrodriguezr
closed
3 years ago
0
medoids tree takes too long
#130
lmrodriguezr
opened
3 years ago
0
Multitrim
#129
lmrodriguezr
closed
3 years ago
0
Fix issue with classify_wf
#128
lmrodriguezr
closed
3 years ago
0
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